Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1624 ATGGCTAGACGTTCACTCTCGCTCTTCACTCTCTTCGTCTTCTCCGCCGCCGTAGTAACCGCCTTGAACTCCAACTGGATCCACGACGAGGAAGACCTTCTGATCCGTCAAGTAGTGCCCGAAGTGGAGGATCACTTGCTCAACGCCGAGCACCACTTCTCCGCCTTCAAGACCAAGTTCGGCAAGACCTACGCCACACAGGAGGAGCACGACTATCGTTTCCGTGTTTTCAAGAACAACTTGCTCCGAGCCAAGTCGCACCAGCAGCTCGATCCCTCCGCCGTCCACGGTGTCACCAGGTTTTCCGATCTTACTCCGTCGGAATTCCGCCGCCAGTTCCTCGGCCTTAAGCCTCTTCGTCTTCCCTCCGACGCAAAGAAGGCTCCGATCCTCCCTACCAACAATCTTCCTACAGATTTCGATTGGCGCGACCATGGAGCCGTTACTGGCGTCAAGAATCAGGGTTCGTGTGGATCGTGTTGGTCGTTTAGCGCCACCGGAGCTTTGGAAGGAGCTCATTTTCTGGCGACTGGCGAGTTGGTGAGCCTTAGCGAACAACAACTGGTCGATTGCGATCACGAGTGTGATCCGGAAGAATATGGAGCATGTGACTCGGGCTGTAATGGTGGATTGATGACCACTGCATTTGATTACGCACTCAAGGCTGGTGGACTGATGCGAGAAGAGGATTATCCTTACACTGGAAGGGACCGTGGCCCTTGTAAATTTGACAAGAGCAAAATTGCTGCTTCCGTTTCTAATTTCAGTGTGGTTTCCCTTGACGAAGATCAGATTGCTGCAAATCTGGTGAAGAATGGCCCTCTTGCAGTTGGTATCAATGCAGTTTTTATGCAGACATACATTGGTGGAGTCTCATGCCCTTACATCTGCGGCAAGCATTTGGATCACGGGGTTCTTCTGGTGGGCTACGGTGCTGGAGCTTATGCTCCCATTCGTTTTAAGGAAAAGCCTTACTGGATCATAAAGAATTCATGGGGGGAGAGCTGGGGAGAGAACGGATATTACAAGATCTGCAGAGGTCACAATGTATGTGGGGTGGACTCCATGGTCTCAACAGTAGCCGCTATACAATGA 1095 0.5169 MARRSLSLFTLFVFSAAVVTALNSNWIHDEEDLLIRQVVPEVEDHLLNAEHHFSAFKTKFGKTYATQEEHDYRFRVFKNNLLRAKSHQQLDPSAVHGVTRFSDLTPSEFRRQFLGLKPLRLPSDAKKAPILPTNNLPTDFDWRDHGAVTGVKNQGSCGSCWSFSATGALEGAHFLATGELVSLSEQQLVDCDHECDPEEYGACDSGCNGGLMTTAFDYALKAGGLMREEDYPYTGRDRGPCKFDKSKIAASVSNFSVVSLDEDQIAANLVKNGPLAVGINAVFMQTYIGGVSCPYICGKHLDHGVLLVGYGAGAYAPIRFKEKPYWIIKNSWGESWGENGYYKICRGHNVCGVDSMVSTVAAIQ* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1624 364 SMART pept_c1 136 361 IPR000668 GO:0006508|GO:0008234
Apr5g1624 364 Pfam Papain family cysteine protease 136 359 IPR000668 GO:0006508|GO:0008234
Apr5g1624 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 325 344 IPR025661 -
Apr5g1624 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 301 311 IPR025660 -
Apr5g1624 364 CDD Peptidase_C1A 137 360 IPR039417 -
Apr5g1624 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 154 165 IPR000169 -
Apr5g1624 364 SUPERFAMILY Cysteine proteinases 50 360 IPR038765 -
Apr5g1624 364 Pfam Cathepsin propeptide inhibitor domain (I29) 53 109 IPR013201 -
Apr5g1624 364 Gene3D Cysteine proteinases 26 361 - -
Apr5g1624 364 PANTHER CYSTEINE PROTEASE RD19C-RELATED 26 361 - -
Apr5g1624 364 PRINTS Papain cysteine protease (C1) family signature 154 169 IPR000668 GO:0006508|GO:0008234
Apr5g1624 364 PRINTS Papain cysteine protease (C1) family signature 303 313 IPR000668 GO:0006508|GO:0008234
Apr5g1624 364 PRINTS Papain cysteine protease (C1) family signature 325 331 IPR000668 GO:0006508|GO:0008234
Apr5g1624 364 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 26 361 - -
Apr5g1624 364 SMART Inhibitor_I29_2 53 109 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1624 Apr-Chr5 19889204 19893031 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1624 5 19889204 19893031 Apr5g1624 5 19889204 19893031 ECH
Apr9g0551 9 7779785 7782120 Apr5g1624 5 19889204 19893031 PCT