LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g1621	ATGAGAATTGATGAGAAAAAGCAGCTGAAAAAGACAGCACAGGCCAGCTCCAGGAAGGGTTGCATGAGAGGTAAAGGAGGCCCTGAGAATGCAAGTTGCACCTACAAAGGTGTGAGACAGAGAACTTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAACCGTGGTGCACGCCTTTGGCTTGGGACATTTGAGACCTCTCATGAGGCTGCTTTGGCTTATGATGCTGCTGCACGTAAGCTTTATGGCTCAGATGCCAAGCTCAATCTACCAGAGCTCTCTGTGTCAATGCAACCTCAGTGTCCACCATCTTCTGTTACCATTCCAATGGAAAACATGCAGCAGCCTCAAATTCAAAACAACTTAGAAATGGTCACTTATCCTAGTTTCAACACCAATCCTGCACTTTCCATGGCTTCTCAACAAGTAGGAGTTGGACCAATATACACTAGTGACTCAGTTGTGTCTCTTCCCTTGGATTCCAACCCTAATCCTGTTGAAACTTATCCAAAACCCATGGAGAATGAGGGGGAGTTCTGTCCCTCATGGGGAACTATGACCAACGAGGGTTTGCCAGTTTTAGATGAGTCCATTTGGGCTGAAGCTGCTATGTCCCTAGATTTTCCTATGATTCCAGAGGTTGAAATTTACCCGACGGGAAACTTGGGAGATGCGAGTCTGTGGGACTCTATGCAAACTCCATGGTGCATGTAA	714	0.4692	MRIDEKKQLKKTAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELSVSMQPQCPPSSVTIPMENMQQPQIQNNLEMVTYPSFNTNPALSMASQQVGVGPIYTSDSVVSLPLDSNPNPVETYPKPMENEGEFCPSWGTMTNEGLPVLDESIWAEAAMSLDFPMIPEVEIYPTGNLGDASLWDSMQTPWCM*	238

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g1621	237	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D-LIKE	4	233	-	-
	Apr5g1621	237	CDD	AP2	33	93	IPR001471	GO:0003700\|GO:0006355
	Apr5g1621	237	PRINTS	Ethylene responsive element binding protein signature	35	46	IPR001471	GO:0003700\|GO:0006355
	Apr5g1621	237	PRINTS	Ethylene responsive element binding protein signature	57	73	IPR001471	GO:0003700\|GO:0006355
	Apr5g1621	237	SMART	rav1_2	34	97	IPR001471	GO:0003700\|GO:0006355
	Apr5g1621	237	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	4	233	-	-
	Apr5g1621	237	SUPERFAMILY	DNA-binding domain	34	91	IPR016177	GO:0003677
	Apr5g1621	237	ProSiteProfiles	AP2/ERF domain profile.	34	91	IPR001471	GO:0003700\|GO:0006355
	Apr5g1621	237	MobiDBLite	consensus disorder prediction	1	33	-	-
	Apr5g1621	237	Pfam	AP2 domain	34	83	IPR001471	GO:0003700\|GO:0006355
	Apr5g1621	237	Gene3D	AP2/ERF domain	34	92	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g1621	Apr-Chr5	19852949	19853662	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Apr5g1621		AP2	7.2e-15	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr5g1621	5	19852949	19853662	Apr5g1621	5	19852949	19853662	ECH
	Apr9g0549	9	7678137	7678868	Apr5g1621	5	19852949	19853662	PCT