Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1617 ATGGAAATCAATTCAGTTTCAAAGCCACTAATTTTGTTTTTAACGGTCTTGTTTCTGGGTTCTGAGCTGATACACTGCAATGTCACCTACGACAGAAAGGCTCTTCTCATCAATGGCCAAAGGAGGGTCCTCATCTCTGGCTCCATTCACTATCCCCGCAGCACCCCTGAAATGTGGGAGGATCTAATTTGGAAGGCCAAACATGGAGGTCTTGATGTCATAGACACTTATGTCTTCTGGGATGTTCACGAACCATCTCCTGGCAATTACAATTTTGAAGGAAGATATGATCTAGTACGGTTCATTAAGACGGTGCAGAAGGTGGGGCTTTATGCAAATCTTCGGATTGGACCTTATATATGTGCTGAGTGGAACTTTGGGGGAATTCCTGTTTGGTTGAAGTATGTACCTGGCATCAGCTTCAGAACGGATAATGGGCCTTTCAAGGCGGCAATGCAAGGTTTCACCCAGAAAATTGTCCACATGATGAAGAGCGAAAAGTTGTTTCAATCTCAGGGTGGTCCAATCATTCTCTCTCAGATTGAGAATGAGTATGGACCAGAAAGCAGGGCAATGGGCGCTGCTGGCCGTGCATACGTAAATTGGGCTGCAAGTATGGCTGTTGGATTGGGTACCGGAGTCCCCTGGGTGATGTGCAAGGAAAATGATGCCCCAGATCCTGTGATAAATTCATGTAATGGTTTTTACTGTGATGATTTCTCTCCAAATAAACCATACAAGCCTAGCATGTGGACCGAGTCTTGGAGTGGCTGGTTTACTGAATTCGGTGGCCCAATTCACCAGCGACCAGTTCAGGATCTAGCATTTGCAGTTGCTCGTTTCATCCAAAAGGGTGGCTCTTATGTGAATTATTACATGTACCATGGAGGAACTAACTTTGGACGATCAGCGGGAGGCCCATTCATAACTACAAGCTACGACTATGATGCTCCAATTGATGAATATGGTTTGATCAGGCAACCAAAGTATAGTCATTTGAAGGAGCTTCATAAAACTATCAAGCGATGTGAACATGCTTTGGTTTCTTCAGATCCCACTGTTGCTTCATTAGGAGTTTTACAGCAGGCTCATGTATTCTCTTCGCGGACTGGAGCATGTGCAGCTTTTCTAGCAAACTATAATGCACAGTCTGCTGCTAGGGTGACCTTCAATAACCGACACTATGACTTGCCTCCCTGGTCCATAAGCATCCTTCCTGATTGCAAAACTTCTGTGTTTAATACTGCAAACGTGAGAGTTCAAACTTCAAAGGTAAAAATGCTTCCTGTCATTTCTAGGTTGTTCTCATGGGAAACCTATGATGAAGATCTATCCTCTCTGGCTGAAAGTTCAAGGATTACATCTCCTGGACTCTTAGAACAGCTGAACGTTACTAGAGACACCAGTGACTATCTATGGTACATTACCAGCATTGACATAAGTTCATCAGAAGCATTTCTTCGAGGAGGACAGAAACCCAGCATTAATGTGCAGTCTTCTGGAGATGCTGTTCATGTTTTTGTTAATGGGCAGTTTTCAGGTTCAGCTTTTGGGACAAGGGAACAGAGAAGTTGCACATTTAATGGGCCAATCAACCTACGTGCAGGAGCAAATAAAATTGCACTTCTCAGCGTGACTGTTGGATTACCAAATGTGGGTCGGCATTACGAAACATGGAAGACAGGGATCACTGGTCCGGTTTTGCTCCATGGTATAGACCATGGACAGAAAGATTTGACATTGAATAAGTGGTTATATCAGGTTGGCCTAAAAGGAGAGGCTATGAATTTGGTGTCTTCCAATGGAGTCTCGTCTGTTGATTGGGTCCAAGAGTCACTAGCTACTCAAAGCCGATCACAATTGAAATGGCACAAGGCTTATTTTGATGCACCTGGGGGTAAAGAACCACTGGCTTTGGACATGGGAAGTATGGGTAAGGGTCAAGTATGGATCAACGGGCAGAGCATAGGGAGATATTGGATGACTTATGCAAAGGGTGACTGTAAATCTTGCAGCTATTCTGGGACATTCCGGCCTGTAAAGTGCCAACTTGGTTGTGGACAACCCACTCAACGATGGTATCACATTCCAAGGTCCTGGCTAAAGCCAACCAAGAACTTGATTGTAGTGTTTGAAGAATTAGGTGGGAATCCGTGGAAAATATCTTTGGTAAAGAGAACGGTACATACTCCTGGAGTTCGTGAGTAG 2208 0.4434 MEINSVSKPLILFLTVLFLGSELIHCNVTYDRKALLINGQRRVLISGSIHYPRSTPEMWEDLIWKAKHGGLDVIDTYVFWDVHEPSPGNYNFEGRYDLVRFIKTVQKVGLYANLRIGPYICAEWNFGGIPVWLKYVPGISFRTDNGPFKAAMQGFTQKIVHMMKSEKLFQSQGGPIILSQIENEYGPESRAMGAAGRAYVNWAASMAVGLGTGVPWVMCKENDAPDPVINSCNGFYCDDFSPNKPYKPSMWTESWSGWFTEFGGPIHQRPVQDLAFAVARFIQKGGSYVNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYSHLKELHKTIKRCEHALVSSDPTVASLGVLQQAHVFSSRTGACAAFLANYNAQSAARVTFNNRHYDLPPWSISILPDCKTSVFNTANVRVQTSKVKMLPVISRLFSWETYDEDLSSLAESSRITSPGLLEQLNVTRDTSDYLWYITSIDISSSEAFLRGGQKPSINVQSSGDAVHVFVNGQFSGSAFGTREQRSCTFNGPINLRAGANKIALLSVTVGLPNVGRHYETWKTGITGPVLLHGIDHGQKDLTLNKWLYQVGLKGEAMNLVSSNGVSSVDWVQESLATQSRSQLKWHKAYFDAPGGKEPLALDMGSMGKGQVWINGQSIGRYWMTYAKGDCKSCSYSGTFRPVKCQLGCGQPTQRWYHIPRSWLKPTKNLIVVFEELGGNPWKISLVKRTVHTPGVRE* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1617 735 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Apr5g1617 735 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Apr5g1617 735 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Apr5g1617 735 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Apr5g1617 735 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Apr5g1617 735 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Apr5g1617 735 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Apr5g1617 735 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Apr5g1617 735 PRINTS Glycosyl hydrolase family 35 signature 619 633 IPR001944 GO:0004553|GO:0005975
Apr5g1617 735 PRINTS Glycosyl hydrolase family 35 signature 646 662 IPR001944 GO:0004553|GO:0005975
Apr5g1617 735 SUPERFAMILY Galactose-binding domain-like 402 573 IPR008979 -
Apr5g1617 735 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Apr5g1617 735 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Apr5g1617 735 SUPERFAMILY Galactose-binding domain-like 581 728 IPR008979 -
Apr5g1617 735 SUPERFAMILY (Trans)glycosidases 27 343 IPR017853 -
Apr5g1617 735 Gene3D Glycosidases 21 343 - -
Apr5g1617 735 PANTHER BETA-GALACTOSIDASE RELATED 4 734 IPR001944 GO:0004553|GO:0005975
Apr5g1617 735 Gene3D - 439 586 - -
Apr5g1617 735 PANTHER BETA-GALACTOSIDASE 4 734 - -
Apr5g1617 735 Gene3D - 593 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1617 Apr-Chr5 19831681 19836652 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1617 5 19831681 19836652 Apr5g1617 5 19831681 19836652 ECH
Apr9g0543 9 7599996 7605517 Apr5g1617 5 19831681 19836652 PCT