Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1552 ATGTCCATGTACACTTCTTCGCACACTGTGATGCCAACCTTTGCGCCTTTGCCAGAACCGGACCTCTCCTTAAACATAAGCCCACCCTTCTCTTCAGATTCTGAAACCAAACAAGTGGGAAGATACAATGGATTAACATTGACTAGAAAAACGCTTTACAACGATATGTGCTCAACCTCGGATTCTGGTAGCAGTGGAAGCGATTTAAGCCATGAAAATGGTCATCGTGAACCCACATTGAGCTTAGGCTTCGCAACGGTAGCTTTGAATCCTCATCCAGTGCAAGGACTCTCTAGAAACTTTAATCGCAGTCTCCACAACTACCAACCTCACATTTATGCTTGCGACTTCAAACGAAATGCTAGAATCATTCACGGTGTGAAAAGGACCATTAGAGCTCCTAGAATGAGATGGACTACGACCCTCCATGCTCATTTTGTTCACGCGGTTCAGCTACTTGGTGGTCATGAAAGGGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACTCTAGCTCACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGCAGCACAGTTGCAGGTTATGGGCAGACAGATACGGGGTTGAGCCAAAAGCCAGGAATTGTCGATCTGCATGGAGACTCAGCTTGTGAGAGAGCCAATTTGCCACATCCACTACAAAAATACCAAAGGGCGTCATCGCAATCATCAATAGGGACAAAGACAAATAACTACCTACAAAAACCCGAAATCAATTCGATGTATTCTCATCTCAAAGGAAACCAAACCATGTTGGGTGGACAGCATTATGGAGGCCTGTCGAATTGCATGAAGGAGAGGTTGGATTCTAGCTCTTTGTCACGTTCCGATGTGATGCTTGATCTAGAGTTCACCCTCGGAAGGACCACTAATTGCAAACATACCACGCGGAATCACCAACAGCATTAG 963 0.4507 MSMYTSSHTVMPTFAPLPEPDLSLNISPPFSSDSETKQVGRYNGLTLTRKTLYNDMCSTSDSGSSGSDLSHENGHREPTLSLGFATVALNPHPVQGLSRNFNRSLHNYQPHIYACDFKRNARIIHGVKRTIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGSTVAGYGQTDTGLSQKPGIVDLHGDSACERANLPHPLQKYQRASSQSSIGTKTNNYLQKPEINSMYSHLKGNQTMLGGQHYGGLSNCMKERLDSSSLSRSDVMLDLEFTLGRTTNCKHTTRNHQQH* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1552 320 Pfam Myb-like DNA-binding domain 135 186 IPR001005 -
Apr5g1552 320 SUPERFAMILY Homeodomain-like 130 188 IPR009057 -
Apr5g1552 320 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 134 187 IPR006447 GO:0003677
Apr5g1552 320 Gene3D - 133 190 - -
Apr5g1552 320 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 3 311 IPR044847 GO:0000976|GO:0006355|GO:0010158
Apr5g1552 320 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 3 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1552 Apr-Chr5 19361628 19364947 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr5g1552 Myb_DNA-binding 1.4e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1552 5 19361628 19364947 Apr5g1552 5 19361628 19364947 ECH
Apr9g0463 9 6434437 6438635 Apr5g1552 5 19361628 19364947 PCT