Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1545 ATGAACACTGCAACATCTCCAATGAGTTTTTCTAATTCTAATAACTCCAACAAACCAACGTCTCCTTCACCTACCATTCAGCAACGCAGGCTTACGAGACAGAGAAGGCTTCGTTACATGAGCGACCAAGACGCTGGGTTAGGGTTACATCCAACCTCTTCTTCTTTACCTGCTTCTCCTCTTCCCTCCTTCGTTAAATCTTCAGACCACTGGTCTTCCTCTGCTATTCCTCAACCCCTTCCACGTCCCGATTCCCCGTTGACTCGCAGACCTGATCTTGGATCTCCTCCGTTCGAACACCCTCCCTTCGCTTTTCCCAGAAAGTCGGTGGATCATGATGCGGTGAAAAGTTTACGATCTTCGAGCAATTTAGGAAGACCGTCGTTTGACCAGGCTACTGCTAATGCCAAATATGATTTGAGAGTGAATATTCCGCACGCGAGAGTCTTGGCGGGTAATACTAGTTCATGTAAAGTTCACAAAGAGGTTTCTCATGATAATGATTCTGAGAATATTTCCAACTTGAGATTGCGTTCTTCTGCTAAGAGTGCCCCAACCAGTATATTCTCCAGTCCTGTTACTAGTCCACGTAGGTCCAGTAATGTAGATTTACACGATCCTTCCCTCAATTTTCCTCAAGATTTTCATGATATTTTGAAAGTTTCACTGCCTAAAACTACTCAGAGTCCAGACCGGTCTCCTCTGCACAGTCCTTACCTTAATCCTAATATTCAAGAGGGGTCTCAGCTCCATAAATTTTGCTCCAGAGTGTGGCCTGAAAGTAATCATGTCGATGCACATCCGCTTCCTCTTCCTCCTAGAGCTTCACTGCCTGCACAGTCATGTTCACAGCATCAACCTGTCATCGTGCATCACACCACAGAAAACTCACCTTCCTTGAAAGGTCAATGGCAGAAAGGAAAACTTATTGGACGTGGATCGTATGGAAGTGTTTATCATGCGACCAATTTAGAGACTGGCGCCTCTTGTGCAATGAAAGAGGTGGATCTGTTCCCTGATGATCCTAAATCTGCTGACTGCATTAAGCAACTAGAGCAGGAAATCAGGATTCTCCGTCAACTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAGTTGGCGATCGACTGTACATATATATGGAGTATGTTCATCCTGGATCACTTCATAAGTTTATGCATGAACATTGTGGAGCTATGACAGAATCTGTAGTTCGCAATTTTACACGGCATATTCTCTCCGGATTGGCATACTTACATAGTACCAAGACTATCCATAGGGATATCAAAGGTGCAAACTTGCTAGTTGATGCATCAGGCATAGTTAAGCTTGCAGATTTTGGGGTATCAAAAATTCTGACAGAAAAATCATATGAACTTTCATTGAAGGGCAGTCCCTACTGGATGGCTCCTGAGCTCATGAAGGCTGCCATAAAGAAAGAATCCAATCCTGACATTGCCATGGCCATTGATATATGGAGCTTAGGGTGTACTATCATCGAAATGCTGACAGGAAAACCTCCTTGGAGTGAATTTGAAGGGCCTCAAGCCATGTTCAAGGTACTTCACAAATCTCCAGATATACCCGAAACTTTGTCATCAGAGGGACAGGATTTCCTTCAGCAGTGTTTCAGAAGGAATCCTGCTGATCGACCATCGGCGGCAACACTTCTTACGCATGTCTTTGTACAAAATTTGCATGATCAAGATGTTGTAGTTCATTCACATGGCCATCCCAGAGGAGACCCTGGACCAGGAGATTATTCACGTAAGCATAGTCCCGGTCACACTTCAAAAAATAGCCGTGGTCTAGTGCCAGCCTTTCGCACACGAATTTTTAATAAAATTAATAATTTAATAGGTGACACTTCCAAAAAATATGATACTGAATCTAATCATATGACATCTTCTCGCGACTCTCCTTGCTCACTGACAGAAGTAAACAGTCCTCAATCTCCCTTGAGATCTAACGCACTCAATTACATGACTGTTACTAATTCCGGCAACATACCCTTCACCGTTATGAGAATCATCAGGCACATTTGA 2052 0.4362 MNTATSPMSFSNSNNSNKPTSPSPTIQQRRLTRQRRLRYMSDQDAGLGLHPTSSSLPASPLPSFVKSSDHWSSSAIPQPLPRPDSPLTRRPDLGSPPFEHPPFAFPRKSVDHDAVKSLRSSSNLGRPSFDQATANAKYDLRVNIPHARVLAGNTSSCKVHKEVSHDNDSENISNLRLRSSAKSAPTSIFSSPVTSPRRSSNVDLHDPSLNFPQDFHDILKVSLPKTTQSPDRSPLHSPYLNPNIQEGSQLHKFCSRVWPESNHVDAHPLPLPPRASLPAQSCSQHQPVIVHHTTENSPSLKGQWQKGKLIGRGSYGSVYHATNLETGASCAMKEVDLFPDDPKSADCIKQLEQEIRILRQLHHPNIVQYYGSEIVGDRLYIYMEYVHPGSLHKFMHEHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDASGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMKAAIKKESNPDIAMAIDIWSLGCTIIEMLTGKPPWSEFEGPQAMFKVLHKSPDIPETLSSEGQDFLQQCFRRNPADRPSAATLLTHVFVQNLHDQDVVVHSHGHPRGDPGPGDYSRKHSPGHTSKNSRGLVPAFRTRIFNKINNLIGDTSKKYDTESNHMTSSRDSPCSLTEVNSPQSPLRSNALNYMTVTNSGNIPFTVMRIIRHI* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1545 683 MobiDBLite consensus disorder prediction 636 654 - -
Apr5g1545 683 MobiDBLite consensus disorder prediction 162 205 - -
Apr5g1545 683 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 8 676 - -
Apr5g1545 683 MobiDBLite consensus disorder prediction 1 30 - -
Apr5g1545 683 Gene3D Transferase(Phosphotransferase) domain 1 301 583 - -
Apr5g1545 683 MobiDBLite consensus disorder prediction 173 205 - -
Apr5g1545 683 MobiDBLite consensus disorder prediction 47 75 - -
Apr5g1545 683 MobiDBLite consensus disorder prediction 626 654 - -
Apr5g1545 683 ProSiteProfiles Protein kinase domain profile. 304 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1545 683 SUPERFAMILY Protein kinase-like (PK-like) 286 578 IPR011009 -
Apr5g1545 683 SMART serkin_6 304 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1545 683 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 8 676 - -
Apr5g1545 683 Pfam Protein kinase domain 305 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1545 683 MobiDBLite consensus disorder prediction 575 606 - -
Apr5g1545 683 MobiDBLite consensus disorder prediction 575 596 - -
Apr5g1545 683 MobiDBLite consensus disorder prediction 1 127 - -
Apr5g1545 683 ProSitePatterns Protein kinases ATP-binding region signature. 310 333 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1545 Apr-Chr5 19318270 19323220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1545 30 567 MAP Kinase Kinase Kinase AT5G66850 46.610 1.98e-153 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Apr5g1545 Pkinase 1.6e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1545 5 19318270 19323220 Apr5g1545 5 19318270 19323220 ECH
Apr9g0455 9 6337828 6344305 Apr5g1545 5 19318270 19323220 PCT