Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1536 ATGCAATCTTCTAACGGCCCTGATTCACAACCCGCGGACCAGAACTCGCAGCAGCAACGACAACAGCAAACACCGCCGCAGCCACTCCCAGTGCCGCCGCAGTGGATGCCGATGCAGTACCCCGCCGCCGCCATGGTAATGCAGCATCACATGTTGCCGCCTCAACATTACGCGCCGCCGCCTCCGCCGCCGCAGCCCTACATGGCTTACCACCAGTACCAGCAACCGGTGCCGCACGTGTCTCACCCTCACCATCAGGGATCCACCGCCGAGAACAAAACCATCTGGGTCGGCGATTTGCATCATTGGATGGACGAAAACTATCTCCACCGCTGTTTCGCTTCCACTGGCGAGATTTCCTCAATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACATGGGACCGCTGAGAAAGTTTTGCAGAATTATGCTGGAATATTGATGCCTAACACAGAGCAACCTTTCCGGCTGAACTGGGCAACATTTAGCACAGGGGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCAGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGCGATGATAGTGAGAGGTCCCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAATCATCTGGCTATCAACAAGGAGGTCAGTCAAATGGCATAACCAGCCAATCTGAAACTGATTCTACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTTACAGCTGAAGATCTTAGGCAGCCATTCTCTCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGCCGGAAAAGGATGTGGTTTTGTACAGTTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGACAACGATAGGCAAGCAAACGGTTCGTCTTTCATGGGGTCGCAATCCAGCAAATAAGCAGCAGTTTAGAGTGGATTTCAGCAATCCCTGGAGTGGGGCGTATTATGGGGGGCCTATTTATGATGGTTATGGATATGCTTTGCCACCTCCTCATGACCCAAGCATATATGCTGCTGCTTATGGAGCCTACCCCATTTATGGAGGACACCAACAGCAAGTAAGTTGA 1269 0.4807 MQSSNGPDSQPADQNSQQQRQQQTPPQPLPVPPQWMPMQYPAAAMVMQHHMLPPQHYAPPPPPPQPYMAYHQYQQPVPHVSHPHHQGSTAENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDSERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGITSQSETDSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPAGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQQFRVDFSNPWSGAYYGGPIYDGYGYALPPPHDPSIYAAAYGAYPIYGGHQQQVS* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1536 422 MobiDBLite consensus disorder prediction 1 35 - -
Apr5g1536 422 MobiDBLite consensus disorder prediction 262 291 - -
Apr5g1536 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 363 IPR000504 GO:0003723
Apr5g1536 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 173 IPR000504 GO:0003723
Apr5g1536 422 Gene3D - 270 371 IPR012677 -
Apr5g1536 422 CDD RRM3_NGR1_NAM8_like 290 361 - -
Apr5g1536 422 SMART rrm1_1 187 261 IPR000504 GO:0003723
Apr5g1536 422 SMART rrm1_1 292 359 IPR000504 GO:0003723
Apr5g1536 422 SMART rrm1_1 94 169 IPR000504 GO:0003723
Apr5g1536 422 MobiDBLite consensus disorder prediction 1 24 - -
Apr5g1536 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 162 IPR000504 GO:0003723
Apr5g1536 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 356 IPR000504 GO:0003723
Apr5g1536 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 257 IPR000504 GO:0003723
Apr5g1536 422 Gene3D - 92 172 IPR012677 -
Apr5g1536 422 MobiDBLite consensus disorder prediction 266 291 - -
Apr5g1536 422 CDD RRM2_SECp43_like 185 264 - -
Apr5g1536 422 CDD RRM1_SECp43_like 94 174 - -
Apr5g1536 422 Gene3D - 185 261 IPR012677 -
Apr5g1536 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Apr5g1536 422 SUPERFAMILY RNA-binding domain, RBD 185 364 IPR035979 GO:0003676
Apr5g1536 422 SUPERFAMILY RNA-binding domain, RBD 58 175 IPR035979 GO:0003676
Apr5g1536 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 421 - -
Apr5g1536 422 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 28 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1536 Apr-Chr5 19247867 19252448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1536 94 390 Eukaryotic Initiation Factors Gene Family AT2G23350 27.419 5.07e-22 96.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1536 5 19247867 19252448 Apr5g1536 5 19247867 19252448 ECH
Apr9g0450 9 6275149 6279674 Apr5g1536 5 19247867 19252448 PCT