Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1527 ATGTCTGCTCAGAGCGAACACCAAACGATTCCCCTTTCGGTGCTTCTGCGCCGTGAATTGGTAAACGAGAAAAGCGAGAAGCCGGAGGTTGCGGTCGTGCACGGGGAAGCTAGCGAGTGTAAGAAAGGAGAAGATTTCACGATGCTAAAAACGGAATGCCAAAGGGTGGTGGGAGATGGAGTGTCTACCTATTCCGTTTTTGCGCTATTTGATGGACACAACGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTTTAAACAATGTTTTAAGTGCAATTCCTGCCGATCTTAACAGAGATGAGTGGATATCAGCTTTGCCTAGGGCTTTGGTCGCAGGCTTTGTAAAAACTGACAAAGATTTTCAACAGAAAGCACAATCATCAGGAACAACTGTAACCTTTGTGATTATAGAAGGATGTTTTATAACAGTTGCATCAGTAGGTGATTCCCGTTGCATACTTGAAACTTTTGAAGGTGGAGTTTATTACTTGTCAGCAGATCATAGACTCGAAAGCAATGAAGAGGAGAGGGTCCGAATCACTTCTAGCGGGGGTGAGGTGGGTCGTCTAAATACGGGTGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTCTCACGGTCCATTGGTGATATGGATGTTGGTGAATTTATTGTCCCTGTACCATATGTAAAGCAAGTGAAGCTTTCTACTGCTGGAGGTAGGGTTGTTATCAGCAGTGACGGTGTCTGGGATGCTCTAACTGCAGAAATGGCCTTAAATTGCTGTCGTGGCATGTCAGCGGAGGCTGCAGCACCACATATTGTGAAAGAAGCTTTGCAAGCAAAGGGACTTAGAGATGACACGACCTGCATTGTTATTGATATATTACCTCAGGAGAAGCCACCTACTTCTATGCCAACACAAAAGAAACCAGTAAAAAAAATGCTCAAGTCATTTTTTCGCAAAAAGTCCTCTGAATCATCTTATATTGACAAGGAATACATGGAGCCAGATGTGGTACAAGAACTATATGAGGAAGGGTCAGCTATGCTTTCAGAGAGGTTAGAAACAAAATATCCACTCTGCAACATGTTCAAGTTGTTTATCTGTGCAGTGTGTCAAGTAGAGATTAAACCAGGGGAGGGTATTTCAATACACGAGGGCGCACCTAACCCAGGAAGATTGCGCCCCTGGGATGGACCTTTCCTTTGCTTAAGTTGCCAAGAAAAGAAAGAAGCCATGGAAGGGAAACGAACATCAGATAGACTTAGCAGCGGAAGTGACTAA 1287 0.4476 MSAQSEHQTIPLSVLLRRELVNEKSEKPEVAVVHGEASECKKGEDFTMLKTECQRVVGDGVSTYSVFALFDGHNGSAAAIYAKENLLNNVLSAIPADLNRDEWISALPRALVAGFVKTDKDFQQKAQSSGTTVTFVIIEGCFITVASVGDSRCILETFEGGVYYLSADHRLESNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSTAGGRVVISSDGVWDALTAEMALNCCRGMSAEAAAPHIVKEALQAKGLRDDTTCIVIDILPQEKPPTSMPTQKKPVKKMLKSFFRKKSSESSYIDKEYMEPDVVQELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISIHEGAPNPGRLRPWDGPFLCLSCQEKKEAMEGKRTSDRLSSGSD* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1527 428 Gene3D - 30 302 IPR036457 -
Apr5g1527 428 ProSiteProfiles PPM-type phosphatase domain profile. 33 295 IPR001932 -
Apr5g1527 428 SUPERFAMILY PP2C-like 43 295 IPR036457 -
Apr5g1527 428 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 2 424 - -
Apr5g1527 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 424 - -
Apr5g1527 428 SMART PP2C_SIG_2 56 295 IPR001932 -
Apr5g1527 428 SMART PP2C_4 23 293 IPR001932 -
Apr5g1527 428 Pfam Protein phosphatase 2C 59 281 IPR001932 -
Apr5g1527 428 CDD PP2Cc 64 295 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1527 Apr-Chr5 19187166 19191195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1527 1 428 PP2C-type Phosphatase Gene Family AT1G47380 75.581 0.0 686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1527 5 19187166 19191195 Apr5g1527 5 19187166 19191195 ECH
Apr9g0434 9 6060238 6066173 Apr5g1527 5 19187166 19191195 PCT