Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1512 ATGGCTCTTCTTCTAGACAACTGCGAAGGCATTTTACTCTCTTTGGACTCACACAAATCGGTGCCAGCTCCATTCCTGACCAAGACATACCAACTAGTAGACGATCCCACCACAGACCACATAGTGTCTTGGGGCGAAGATGACACCACCTTTGTCGTTTGGCGCCCCCCAGAGTTCGCTAGGGACCTTCTCCCCAACTACTTCAAGCACAACAACTTCTCAAGCTTCGTTCGCCAACTCAACACTTATGGTTTTAGAAAGATCGTGCCAGATAGATGGGAGTTCGCGAATGAATTCTTCAAGAAAGGAGAAAAACACTTGCTGTGCGAGATCCATAGAAGAAAAACGGCTCAGCCTCAACAAGGAAGCATGAATCACCACCACCATCATCACCAGCATCATTCTCATTCTCCGCTGGGAATCAACGTTCCCTCTTTCTTTCCCTTCTCCACCAGAGTCAGCATCTCTCCCTCCAATGAATCCGACGAGCAAGCCAATTGGTGTGACTCTCCTCCACGTGGACCCTCTTCAGTCGTTAACGGAGTTTCCAACTACAACACTTCAGTCACTGCGCTTTCTGAGGACAACGAGAGACTCAGAAGAAGCAACAACATGCTCATGTCCGAACTTGCACACATGAAAAAGCTCTACAACGATATTATCTACTTCGTTCAGAACCACGTTAAGCCAGTGGCTCCAAGCAACTCTTACTCTTCTTCTTTTATACTATGCAATACACCACAAGCAACTCCAATAAGTAGCGGTAATGTTTCCATGATGCAAAGGCCAATGAACCAGCTTTTGGGGTATTATTCTACTAACCCTAAGCAAGCCACCACTCACTCTCAACCTCAACCTCAAACATATGTAGTGAACTCTCCCACTAACACATCAAGGAGCTCCATAACGATTGTTGAAGGACCTAGCAGTAACAGCTGCAAGACTAAGCTTTTTGGGGTGTCTTTGCAGTCCAAGAAAAGGGTGCACCCTGATTATGGATCTAATAATCCCACTAATTCGGAGACCAACAAGGCTCGTTTGGTTTTGGAAAAGGACGACTTGGGCTTGAATCTCATGCCTCCCTCCACTTGTTAG 1095 0.4648 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQGSMNHHHHHHQHHSHSPLGINVPSFFPFSTRVSISPSNESDEQANWCDSPPRGPSSVVNGVSNYNTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSFILCNTPQATPISSGNVSMMQRPMNQLLGYYSTNPKQATTHSQPQPQTYVVNSPTNTSRSSITIVEGPSSNSCKTKLFGVSLQSKKRVHPDYGSNNPTNSETNKARLVLEKDDLGLNLMPPSTC* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1512 364 MobiDBLite consensus disorder prediction 326 345 - -
Apr5g1512 364 MobiDBLite consensus disorder prediction 275 307 - -
Apr5g1512 364 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr5g1512 364 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr5g1512 364 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr5g1512 364 Gene3D - 17 116 IPR036388 -
Apr5g1512 364 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Apr5g1512 364 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 290 363 IPR027725 -
Apr5g1512 364 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 237 IPR027725 -
Apr5g1512 364 MobiDBLite consensus disorder prediction 115 137 - -
Apr5g1512 364 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr5g1512 364 Coils Coil 189 209 - -
Apr5g1512 364 MobiDBLite consensus disorder prediction 155 182 - -
Apr5g1512 364 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr5g1512 364 MobiDBLite consensus disorder prediction 328 344 - -
Apr5g1512 364 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr5g1512 364 PANTHER BNAC06G00310D PROTEIN 12 237 - -
Apr5g1512 364 PANTHER BNAC06G00310D PROTEIN 290 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1512 Apr-Chr5 19081912 19083113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1512 1 363 HSF AT1G46264 56.589 1.09e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr5g1512 HSF_DNA-bind 3.2e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1512 5 19081912 19083113 Apr5g1512 5 19081912 19083113 ECH
Apr9g0414 9 5740079 5741260 Apr5g1512 5 19081912 19083113 PCT