Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1510 ATGCAAGGGCAGAGAGGTACAATCGGTTCAATGTCTGAAACATTAGAATTTGATTGTGGATCTACATCAAGTAATTCTAACGCGGATCAGCAGATTTGCTGGAATAATGTGCAGAATCGGGCAGAAAATCAAATACCTGATTATATACTTTCTCCTGGTCATTTGAACTCATCTTATGTGAATTCTATAAATCAAGAATGGCAAAATTTTAGTGGATGGAGCTTAGGAGAGCCAAGTTCCAGTAATACGCCAAATGAGGTTGACAGTAATGAGCATAAAAGAGAACTTGGATGGTCATTGACTAGAACTGCTGGTACAGTAGATGGTCCAAGACTAGAAGAAAGGTGCCTTGAACCAACCAATGCTCTTTCACTAGACAATGCCAATGCAGGTCCTATGTATATGCGTAGCTCCAATTGTCATTTGATTTCCCGGAATATCAACTTAAATGCAGGTTTAGCGGAAAGTGGCAGTGATAATAGTCAACACCTGGAGGGCCCTAACTTACAAAAGTCTAGTGGGTCAGTAAATGAGAGTGTATCATCTATTGTTGGATCTGGTTCTTTTCCACTTCCTCCCGGAAATAATGGCTTCCTGGTAGCAGATAACGATGGTAGGCCAGGTTGTTCTCTCGAGACTCAACGCATGTCTTGTAAAAGAAAAGCTGTTGAAGGAAGTTCAAGCTACAGTCAGCATACAGATGGTAATGCTTGGCTCCCTATTCCTACTTGGGATAATGCCGGGAGCAGTTCCAGTAGATCTATTTCCTCAGAACAGGTAAATGCAAGACTTGGCCTGGGTACGGGGGATGAAGCATCTGAAAAGGCTTCTGATTCAAATGTTGCAGGAAGCTCGGAAAGCTTTAACAGGAATTTCCGGTTGAGGATAAATCCTTCTAACCAACAAAGTTCCATTCCTTCCACTGCTTTCTCAACTGGGAGCATGATTAGGCACTCTGTTGTTTCATCATCCTCTCAAGTGTCACAGAGGTTTCATCCTGTTGATAATTCTCTGAACTTGAGGTCAGCACCACCAATAGATAATATGATTCCTCAAAGCCAGCCACTAGTAATTCATGTTCCTGCTTTGCCAAGGAATAGACAATCATTTAGATGGAGTGGTAGTTCTAGGTCAAGAAACATCCATTCATCAAACTCAATTGTATGTGCGGACAGGAATCAGGAGGATGCAAACTCAAGAAGTATGTCCAGAAATATTTTAGAAAACCCAGGTTTTGTACCTGCAACTGATTTAAGAAATTTGGTTCAAACTCCAACTATTAGAGCTTCAAGTTCTAGTAGTGAAAATTTAAGTATTCCAGGAAATGTTGCTTCTTCATCACGGACTGCATCAAATCCAGCTACCAATCCCTCATCTGCCCCAACTTGGGTTTCTTGTCCTATATCTGAATATGTCCGTCGGTCCTTATTTTCTCCTGGTTCTGATGCTATTGGAAGTCCAAGCAATAATTATTCTTCCTTGCGCTCTGGTCTTTCTTCATCTGAATCAAGGATATTATCATCTGGGGTTGGGGCAAACCTGGGATCATCTTCACGGTTGGAGAGGCAAGGAGATGGTGATTTTGGAATACCCTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTTCACAATGTTTTGGGCCTTATCCGTAGAGGTGGTGGGAGCATGCGAATTGAGGATGTTATGATACTTGATCAATCATTTCTCTCTGGAATAGCTGATGTTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTACTGGCTTTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCATATTGAAACTCTTGAAACATAAAAAGTATTCGGTTGAAACAGGATCTCAGCCTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGAGATGATATTGGAACACTTGATTGTGGCCATGATTACCATAGGGACTGTATCAAGCAGTGGCTAATGCGCAAGAATCTGTGTCCCATTTGTAAGACAACAGGCTTGGCAACATGA 2076 0.4186 MQGQRGTIGSMSETLEFDCGSTSSNSNADQQICWNNVQNRAENQIPDYILSPGHLNSSYVNSINQEWQNFSGWSLGEPSSSNTPNEVDSNEHKRELGWSLTRTAGTVDGPRLEERCLEPTNALSLDNANAGPMYMRSSNCHLISRNINLNAGLAESGSDNSQHLEGPNLQKSSGSVNESVSSIVGSGSFPLPPGNNGFLVADNDGRPGCSLETQRMSCKRKAVEGSSSYSQHTDGNAWLPIPTWDNAGSSSSRSISSEQVNARLGLGTGDEASEKASDSNVAGSSESFNRNFRLRINPSNQQSSIPSTAFSTGSMIRHSVVSSSSQVSQRFHPVDNSLNLRSAPPIDNMIPQSQPLVIHVPALPRNRQSFRWSGSSRSRNIHSSNSIVCADRNQEDANSRSMSRNILENPGFVPATDLRNLVQTPTIRASSSSSENLSIPGNVASSSRTASNPATNPSSAPTWVSCPISEYVRRSLFSPGSDAIGSPSNNYSSLRSGLSSSESRILSSGVGANLGSSSRLERQGDGDFGIPYSLRTLAVASEGSSRLVSELHNVLGLIRRGGGSMRIEDVMILDQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKHKKYSVETGSQPDAEPCCVCQEDYGDGDDIGTLDCGHDYHRDCIKQWLMRKNLCPICKTTGLAT* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1510 691 MobiDBLite consensus disorder prediction 371 400 - -
Apr5g1510 691 MobiDBLite consensus disorder prediction 154 181 - -
Apr5g1510 691 CDD RING-H2_TTC3 643 685 - -
Apr5g1510 691 MobiDBLite consensus disorder prediction 74 96 - -
Apr5g1510 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 688 IPR013083 -
Apr5g1510 691 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 690 IPR045191 GO:0061630
Apr5g1510 691 Pfam Ring finger domain 644 685 IPR001841 -
Apr5g1510 691 SUPERFAMILY RING/U-box 633 687 - -
Apr5g1510 691 SMART ring_2 644 684 IPR001841 -
Apr5g1510 691 ProSiteProfiles Zinc finger RING-type profile. 644 685 IPR001841 -
Apr5g1510 691 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 690 - -
Apr5g1510 691 MobiDBLite consensus disorder prediction 426 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1510 Apr-Chr5 19052454 19060392 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1510 217 691 C3H Transcription Factor Family AT2G15530 36.293 5.31e-69 237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0411 9 5700406 5707679 Apr5g1510 5 19052454 19060392 PCT