Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1509 ATGCAAAGACAGAGAAATACAATTGGTTCAATGTCTGAAACGTTAGAATTTGATTGTGGATCTACATCAAATAATTCTACTGTGGATCAGCAGATTTGCTGGAATAATGTGCGGAATCCTGCAGAGAATCAAATGCCTGACTGTATTCTTTCTCCCAGTGATATGAACTCATCTTATGCGAATTCTAGAAATCATGAATGGCGAAATTTGAGTGGATGGAGTTTAGGAGAGCCAAGTTCCAGTAATACACCAAATGAGGTTGATAATAATGATCAAAATAGAGAACTTGGATGGTCATCAACCATAAATGCTGGTGCATTAGCTGGTCCAAGACTAGAAGAAAGGCACCTTGAACAAGGCAATGCTCTTTCACTAGACAATGGCAATACGGGTCCAATATATATGCACAGCCCCAATTCTCATTTGATGCCCCAGAGTATCAACTTAAATGCAGGTTTAGCGGACAGTGGCAGTGATAATAGTCAACATCTGGAATGCCCTAATTTACACAAGTCTAGTGGGTCAGTAAATGAGAGTATACCATCTAATGTTGGATCTGGTTCTTTTCCACTTCCTCCTGGAAATAGTGGCTTACTGGTAAAAGATAATGATGGTAGGTCAGGTTGTTCTCTCGAGACCCGACGTACATCTTGTAAAAGAAAGGCTGTTGAAGGAAATGCTGGACAATCTTCAGGTGCTGGAAGTTCTAGCTACAGTCAGCATACAGATGGTAATGCTTGGCTCCCCATTCCTACTCAGGATAATTCTGGGAGAAGTTCAAGCAGAAATATTTCCTCAGAACAGGTAAATGCAAGACTTGGACTGGGTATGGGGGATGAAGCATCTGAAAACGTCCCTGATTCAAACGTTGCAGGAACCTCAGAAAGCTTTCTCAGGAATTTCCGGTTGAGGATAAATCCTTCAAACCAACAGAATTCCATTCCTCCCACAGCATTCTCGACTGGCAGCATGATTAGGAACTCTGGTGTTTCTTCGTCCTCTCAAGTGTCACAAAGGTTTCATCCTGTTGATAATTCTTTGAACTTGAGGTCAGCGCCACCAATAAATGATACGATTCCTCATAGTCAGCCACTAGTAATTCATTTTCCTGCTTTGCCGAGGAATAGGCAATCATTTAGATGGAATGGTAGTTCTAGCTCAAGAAACATCCATTCATCAAACTCAGTTGTATGTGCCAACAGGGATCAGGAGGGTACAAGCTCAAGAAGTATGTCTAGAAATATTTTAGAACGCCCAGTCTTTGTACCTGCAAGTGATTTAAGAAATTCTGTTCTAACTCCAACTATTAGAGCTTCAAGCTCAAGTAGTGAAAGTTTAAGCATATCAGGAAATGTTGCTTCTTCATCACGGACTGGATCAAATCCAGCAACCAATCCCCCATCTGCCTCAACTTGGCCTTCTCATACTAATGCTCCCCATCATCCTTGGAGGTTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCTGGTTCTGATGCTAATGGAAGTCCAAGCAATAGTAATTCTTCCTTGCACTCAAGTCTTTCTACATCTGAATCGAGGATGTTATCATCTGGCACTGGAGCAAACCCAAGATCATCTTCATGGTTGGAGAGGCATGGAGATACTGACTTTGGAATTCCCTATTCACTACGTACTTTGGCTGTGGCAGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTTTTGGGCCTTATCCGTAGAGGTGGTGGGAGCATGCGAATTGAGGATGTTATGATCCTTGATCAATCCTTTCTTTCTGGAATAGCTGATGTTCATGATCGGCACAGGGATATGCGACTTGATGTTGATAACATGTCTTACGAGGAGTTACTGGCTTTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCATATTGAAACTCTTGAAACAGAAAAATTATTCGGTTGAAACAGGATCTCAGCTTGATGCAGAACCCTGCTGTGTTTGTCAGGAGGACTATGGTGATGGAGACGATATTGGAACGCTTGATTGTGGCCATGATTACCACAGGGACTGCATCAAGCAGTGGCTAATGCACAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACATGA 2127 0.425 MQRQRNTIGSMSETLEFDCGSTSNNSTVDQQICWNNVRNPAENQMPDCILSPSDMNSSYANSRNHEWRNLSGWSLGEPSSSNTPNEVDNNDQNRELGWSSTINAGALAGPRLEERHLEQGNALSLDNGNTGPIYMHSPNSHLMPQSINLNAGLADSGSDNSQHLECPNLHKSSGSVNESIPSNVGSGSFPLPPGNSGLLVKDNDGRSGCSLETRRTSCKRKAVEGNAGQSSGAGSSSYSQHTDGNAWLPIPTQDNSGRSSSRNISSEQVNARLGLGMGDEASENVPDSNVAGTSESFLRNFRLRINPSNQQNSIPPTAFSTGSMIRNSGVSSSSQVSQRFHPVDNSLNLRSAPPINDTIPHSQPLVIHFPALPRNRQSFRWNGSSSSRNIHSSNSVVCANRDQEGTSSRSMSRNILERPVFVPASDLRNSVLTPTIRASSSSSESLSISGNVASSSRTGSNPATNPPSASTWPSHTNAPHHPWRLSEYVRRSLFSPGSDANGSPSNSNSSLHSSLSTSESRMLSSGTGANPRSSSWLERHGDTDFGIPYSLRTLAVAGEGSSRLVSELRNVLGLIRRGGGSMRIEDVMILDQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKQKNYSVETGSQLDAEPCCVCQEDYGDGDDIGTLDCGHDYHRDCIKQWLMHKNLCPICKTTGLAT* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1509 708 MobiDBLite consensus disorder prediction 149 190 - -
Apr5g1509 708 MobiDBLite consensus disorder prediction 494 537 - -
Apr5g1509 708 MobiDBLite consensus disorder prediction 380 412 - -
Apr5g1509 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 707 IPR045191 GO:0061630
Apr5g1509 708 SMART ring_2 661 701 IPR001841 -
Apr5g1509 708 MobiDBLite consensus disorder prediction 74 96 - -
Apr5g1509 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 705 IPR013083 -
Apr5g1509 708 MobiDBLite consensus disorder prediction 228 265 - -
Apr5g1509 708 MobiDBLite consensus disorder prediction 435 477 - -
Apr5g1509 708 MobiDBLite consensus disorder prediction 435 479 - -
Apr5g1509 708 MobiDBLite consensus disorder prediction 207 221 - -
Apr5g1509 708 MobiDBLite consensus disorder prediction 496 536 - -
Apr5g1509 708 SUPERFAMILY RING/U-box 660 704 - -
Apr5g1509 708 MobiDBLite consensus disorder prediction 149 265 - -
Apr5g1509 708 ProSiteProfiles Zinc finger RING-type profile. 661 702 IPR001841 -
Apr5g1509 708 Pfam Ring finger domain 661 702 IPR001841 -
Apr5g1509 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 707 - -
Apr5g1509 708 CDD RING-H2_TTC3 660 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1509 Apr-Chr5 19036796 19043369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1509 1 708 C3H Transcription Factor Family AT2G15530 32.138 8.20e-73 248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1509 5 19036796 19043369 Apr3g1641 3 31891523 31902951 ECH
Apr5g1509 5 19036796 19043369 Apr5g1509 5 19036796 19043369 ECH