Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1502 ATGGCGCAAATCCCCGAGAATGAAGAAGTGGCTCAGCGTCATATTCCGCCGTTGAACACGTCGTTGTACGTTGGTGATCTTGACGATCACGTCACCGATACGATGCTCACAAATCACTTCAACCAGGTTGGTGAAGTCGTTTCCGTTCGAATTTGCATGAACATGTTCACTCATCAATCCCTCGGTTACGGCTACGTCAATTACAGTAATCACGAGGACGCCAAAAAAGCAATTGAAGTGCTGAATTTCACTTCGTTGAATAACAAACCCATTAGGGTAATGTTTTCTAATCGGGACCCTAGCGCTCGGAAGAGTAGTACTGCTAACCTCTTTGTCAAGAATTTGGATAAGGAAATAGATAACAAGGCTTTGCATGAAACCTTTGTGGCTTTTGGAAATATTCTTTCTTGCAAGGTCGCGGTGGATCCTTCTGGTCAGTCTAAAGGCTACGGTTTTGTGCAATTTGAGAAAGAAGGATCTGCACGAGAAGCTATTGACGAGTTAAATGGCTCGATAATCCATGGTAAACAGCTCTATGTGGGTCAGTTTCGGCGAAAGCAGGAGAGAGAGAGTGCTCTGAGGGATGGAAAGTTTAATAATCTATATGTGAAAAACCTATCGGAGTCAGTAACGGAGGGTGAGTTGAACATAATTTTTGGAGAATATGGACCCATTACCAGTACTGTAGTGATGAGAGATATAGATGGTATATCGAAACGTTTTGGTTTTGTCAATTTTGCGAATGTTGATGATGCTGCTAAAGCTTTAGAGGAACTTAATGGAACGATTTTGGATGGTAAGGAGTTGTACGTTGGAAAAGCCCAGAAAAAAAGTGAAAGGCAGCTTGAACTGAAAGAACGATATGGGCAGACTTCGAAGGATGCCTTTGGTGTGCATCCCGGTTCAAACTTGTATCTCAAGAACTTGGACGATAGTGTTGACGATGAAAAACTCTGCAAACTGTTCTCTGTGTTTGGTTTAATAACCTCATGCAAGATTATGCGAGATCCACAGGGGATTAGTAGAGGATCTGGATTTGTTGCATTTTCATGTCCTGACTCTGCAACTTGGGCTCTTTCTGAGATGAATGGTAAAATGGTTGCTGGAAAGCCTCTCTATGTCGCCCATGCACAGAGAAAAGAAGAGAGAAGAGCAAAGTTACAGGAACAATTTTCGCAAACAAGACCTGTTGGAACAATTGGACCTCGAATGCCACTGTACCCACTGGGGGCTCCTGGGATGGGACCACCGCCACCGTTTTTCTATCGGCGACCACCTGTAGCTCCAGCCTTTGTACCTCAGGCTGGATTTGGTTACCAGCAGCAATTTGTTCCCGGAATGAGACCAGGTGGTGCTCCTCCGCAAAGCTTGTTTGTTCCAGGGGCTCAACAAGGTCAACAGGGACAGCTCCCAAGTGAACAACGAGGAGCAGGGCCTACGCAACAACTCCAGCAACCAATGCCATCGATGCAGCCAATGCAAATGGGACATGTCTATGCATGTACTAATGTACCTGTTTTTCAGCAAATGCCCATTCAGACCCTTTCTACAGCCCTTGCAAGTGCTTCTCCTGAACAACAGAGGATAATGCTTGGTGAAACTTTGTACCCGCTTGTAGATAAACTGGAGCATAATGCAGCAACAAAGATTACGGGTATGATTTTGCAGATGGACCAAGCTGAAGTGTTACATCTGATTGAATCACCAGATGATCTTAAGGATAAAGTTGCCGAGGCCATGAATTTGTTGAGAGATATTGAACTGCAGCCATCAAACAACCCAGTCGATCACCTGGCTTTTCTATCTATCTCTGAATGA 1818 0.4455 MAQIPENEEVAQRHIPPLNTSLYVGDLDDHVTDTMLTNHFNQVGEVVSVRICMNMFTHQSLGYGYVNYSNHEDAKKAIEVLNFTSLNNKPIRVMFSNRDPSARKSSTANLFVKNLDKEIDNKALHETFVAFGNILSCKVAVDPSGQSKGYGFVQFEKEGSAREAIDELNGSIIHGKQLYVGQFRRKQERESALRDGKFNNLYVKNLSESVTEGELNIIFGEYGPITSTVVMRDIDGISKRFGFVNFANVDDAAKALEELNGTILDGKELYVGKAQKKSERQLELKERYGQTSKDAFGVHPGSNLYLKNLDDSVDDEKLCKLFSVFGLITSCKIMRDPQGISRGSGFVAFSCPDSATWALSEMNGKMVAGKPLYVAHAQRKEERRAKLQEQFSQTRPVGTIGPRMPLYPLGAPGMGPPPPFFYRRPPVAPAFVPQAGFGYQQQFVPGMRPGGAPPQSLFVPGAQQGQQGQLPSEQRGAGPTQQLQQPMPSMQPMQMGHVYACTNVPVFQQMPIQTLSTALASASPEQQRIMLGETLYPLVDKLEHNAATKITGMILQMDQAEVLHLIESPDDLKDKVAEAMNLLRDIELQPSNNPVDHLAFLSISE* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1502 605 Gene3D - 189 292 IPR012677 -
Apr5g1502 605 CDD RRM3_I_PABPs 198 277 - -
Apr5g1502 605 Gene3D - 2 102 IPR012677 -
Apr5g1502 605 PANTHER RNA BINDING PROTEIN 16 514 - -
Apr5g1502 605 PANTHER RNA BINDING PROTEIN 508 592 - -
Apr5g1502 605 SMART rrm2_1 109 181 IPR003954 GO:0003676
Apr5g1502 605 SMART rrm2_1 21 94 IPR003954 GO:0003676
Apr5g1502 605 SMART rrm2_1 303 375 IPR003954 GO:0003676
Apr5g1502 605 SMART rrm2_1 200 272 IPR003954 GO:0003676
Apr5g1502 605 SUPERFAMILY PABC (PABP) domain 463 589 IPR036053 GO:0003723
Apr5g1502 605 SMART rrm1_1 303 375 IPR000504 GO:0003723
Apr5g1502 605 SMART rrm1_1 21 94 IPR000504 GO:0003723
Apr5g1502 605 SMART rrm1_1 109 181 IPR000504 GO:0003723
Apr5g1502 605 SMART rrm1_1 200 272 IPR000504 GO:0003723
Apr5g1502 605 SUPERFAMILY RNA-binding domain, RBD 19 189 IPR035979 GO:0003676
Apr5g1502 605 CDD RRM2_I_PABPs 108 181 IPR045305 -
Apr5g1502 605 CDD RRM4_I_PABPs 301 379 - -
Apr5g1502 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Apr5g1502 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 98 IPR000504 GO:0003723
Apr5g1502 605 SMART poly_2 523 586 IPR002004 GO:0003723
Apr5g1502 605 PANTHER POLYADENYLATE-BINDING PROTEIN 16 514 - -
Apr5g1502 605 PANTHER POLYADENYLATE-BINDING PROTEIN 508 592 - -
Apr5g1502 605 Pfam Poly-adenylate binding protein, unique domain 519 583 IPR002004 GO:0003723
Apr5g1502 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 379 IPR000504 GO:0003723
Apr5g1502 605 MobiDBLite consensus disorder prediction 459 488 - -
Apr5g1502 605 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 511 588 IPR002004 GO:0003723
Apr5g1502 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Apr5g1502 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 372 IPR000504 GO:0003723
Apr5g1502 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 269 IPR000504 GO:0003723
Apr5g1502 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 92 IPR000504 GO:0003723
Apr5g1502 605 SUPERFAMILY RNA-binding domain, RBD 197 291 IPR035979 GO:0003676
Apr5g1502 605 Gene3D - 296 400 IPR012677 -
Apr5g1502 605 MobiDBLite consensus disorder prediction 449 488 - -
Apr5g1502 605 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 21 584 IPR006515 GO:0003723
Apr5g1502 605 Gene3D - 103 188 IPR012677 -
Apr5g1502 605 Gene3D - 507 587 - -
Apr5g1502 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 276 IPR000504 GO:0003723
Apr5g1502 605 CDD RRM1_I_PABPs 21 100 - -
Apr5g1502 605 SUPERFAMILY RNA-binding domain, RBD 297 388 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1502 Apr-Chr5 18994742 18998370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1502 19 604 Eukaryotic Initiation Factors Gene Family AT4G34110 52.979 0.0 631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1502 5 18994742 18998370 Apr3g1634 3 31807557 31814726 ECH
Apr5g1502 5 18994742 18998370 Apr5g1502 5 18994742 18998370 ECH