Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1496 ATGGGAAGGAATGGATGTGCCAAGGTAATGTTCAAGATCCTCATCGCGTTCACGGTCTTCGCAGTGTCATTGGCCTCGGACAAGGCAGCGTGGAGGAGTGACGAGGAAGTAATGGCTATATACGAGAAGTGGCTTGTGAAACATGGTAAAGTTTATAACGCGCTGGGCGAGAAGGAGAAGAGGTTCGAGATCTTCAAAGACAACCTCAAGTTTATCGACGAGCACAACGCAGAGAACCGGACATACAAGGTTGGATTGAACCGGTTCGCTGATCTTAGCAACGAGGAGTACCGGACCAAGTATTTGGGAGCCAAGATTGATCTAAGGGTGGCCAGGCCCAGCAACCGTTACGCTCCGCGCGTGGGCGACAAATTGCCGAAATCTATTGATTGGAGGAAGAAAGGTGCCGTCGTACGAGTCAAAGACCAAGGAAATTGCGGTAGTTGTTGGGCATTCTCTGCAATCGCCGCAGTGGAAGGGATTAATAAGATAGTAACAGGCGATCTAATTTCACTCTCAGAGCAAGAATTGGTGGATTGTGACAGAACAGTTAATGCAGGATGTGATGGCGGACTCATGGATTATGCCTTTGAGTTCATTATAAACAATGGTGGCATTCACACCGAAGAAAGTTACCCCTATCGAGGGGTTGATGGTATATGTGACCGATATAAGAAAAATGTAGGACTTGTTACAATTGATGCCTACGAAGATGTTCCTGCCTATGATGAGTTAGCCTTGAAAAAGGCTGTAGCAAATCAACCAGTGAGCGTTGCCATTGAAGCGAGCGGTAGGGAGTTTCAGTTATACGAATCAGGTATATTCAGAGGAAAATGTGGGACAGCATTAGACCATGGTGTTACAGTTGTTGGGTATGGAACAGAAGATTGGATTGATTATTGGACAGTGAAAAATTCATGGGGCAAGAGTTGGGGAGAGGAAGGTTATATTAGAATGGAGCGTAATTTACCAAAAAGTAGAGCCGGAAAGTGTGGAATTACAACTTTGTCCTCCTATCCCATAAAGAGGGGCCAAAATCCTCCAAATCGTGAACCATCACCTCCTTCACCAGTGAAGCCGCCACATGTTTGTGATAATTACTACAGTTGTGTTGAAGGCACTACTTGTTGTTGTGTTTTTGAGTTGGCAAATTATTGTTATGGGTGGGGATGTTGTGCTTTTGAAGCTGCTACCTGCTGTGAAGATCACTCAAGTTGTTGCCCGCATGATTATCCTATCTGCAACATTTATGCAGGGACCTGTCATATGAGTAAGAATGACCCCTTTGGAGTGAAGGCAATGAAGAGAACTCCAGCTAAACCGCACTGGGCGTTTGCGGGTAGGAACCAGATAATTTGA 1359 0.4555 MGRNGCAKVMFKILIAFTVFAVSLASDKAAWRSDEEVMAIYEKWLVKHGKVYNALGEKEKRFEIFKDNLKFIDEHNAENRTYKVGLNRFADLSNEEYRTKYLGAKIDLRVARPSNRYAPRVGDKLPKSIDWRKKGAVVRVKDQGNCGSCWAFSAIAAVEGINKIVTGDLISLSEQELVDCDRTVNAGCDGGLMDYAFEFIINNGGIHTEESYPYRGVDGICDRYKKNVGLVTIDAYEDVPAYDELALKKAVANQPVSVAIEASGREFQLYESGIFRGKCGTALDHGVTVVGYGTEDWIDYWTVKNSWGKSWGEEGYIRMERNLPKSRAGKCGITTLSSYPIKRGQNPPNREPSPPSPVKPPHVCDNYYSCVEGTTCCCVFELANYCYGWGCCAFEAATCCEDHSSCCPHDYPICNIYAGTCHMSKNDPFGVKAMKRTPAKPHWAFAGRNQII* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1496 452 Pfam Papain family cysteine protease 125 341 IPR000668 GO:0006508|GO:0008234
Apr5g1496 452 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Apr5g1496 452 Gene3D Granulin 361 424 IPR037277 -
Apr5g1496 452 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 370 - -
Apr5g1496 452 SMART GRAN_2 364 421 IPR000118 -
Apr5g1496 452 SMART pept_c1 125 341 IPR000668 GO:0006508|GO:0008234
Apr5g1496 452 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Apr5g1496 452 Gene3D Cysteine proteinases 22 343 - -
Apr5g1496 452 SUPERFAMILY Cysteine proteinases 32 341 IPR038765 -
Apr5g1496 452 SMART Inhibitor_I29_2 41 97 IPR013201 -
Apr5g1496 452 MobiDBLite consensus disorder prediction 337 359 - -
Apr5g1496 452 PANTHER CYSTEINE PROTEASE 23 370 - -
Apr5g1496 452 CDD Peptidase_C1A 126 340 IPR039417 -
Apr5g1496 452 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Apr5g1496 452 Pfam Cathepsin propeptide inhibitor domain (I29) 41 97 IPR013201 -
Apr5g1496 452 SUPERFAMILY Granulin repeat 361 395 - -
Apr5g1496 452 Pfam Granulin 375 422 IPR000118 -
Apr5g1496 452 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Apr5g1496 452 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Apr5g1496 452 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1496 Apr-Chr5 18920900 18924698 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1496 5 18920900 18924698 Apr3g0111 3 1933459 1935868 ECH
Apr5g1496 5 18920900 18924698 Apr5g1496 5 18920900 18924698 ECH
Apr9g0398 9 5490328 5494669 Apr5g1496 5 18920900 18924698 PCT