Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1494 ATGGCTAATCACCATCATCACCCTCACCAAAAATCCCTTTTCGACACCCTATACTGCTCTGAAGAGCATTGGGAAGAACACGTAGGCCAAGATGAATTAGAACAAACCGAGCATGTGTACGGTTGTGATTATATAAGCGCTAACACTAGTACCACTAGCACAATAATAAACACGCCTCCTACGTTGTTTGAAAATGACATGTTTTGCGACGAAGAAGAGTTACCATCACTTCTCTCTAAAGAACAACACAACCCTCTATTCACGTTCCTCCAAAGCCACCCTCTGTTGGACTGTTCTCGTAGAGAAGCTGTCGAATGGATGCTCAAAGTGAACGCCCACTACTCCTTCTCTGCTCTCACTGCTGTTCTTGCTGTTAACTACTTTGACCGGTTCCTCTTCAGCTTCCGCTTTCAGAATGGGAAGCCATGGATGACTCAGCTTGCTGCTGTGGCTTGCCTCTCTCTCGCTGCCAAGGTCGAAGAGACACAAGTTCCCCTTCTACTAGACCTTCAAGTGGAGGATAGTAGATACTTGTTCGAAGCCCAAACCATTAAAAGGATGGAGATTTTGGTTCTTTCCACTCTTGGGTGGAAGATGAATCCACCAACCCCTCTTTCTTTTCTTGATTATATCACGAGAAGACTTGGATTGAAGGATCATCTTTGCTGGGAGTTACTCAAGAGGTGCCAAGGCGTTCTTCTCTCTCTCCTCGGAGATTCCAGGTTTATGAGTTATCTGCCTTCTGTGTTGGCAAATGCTACAATGATGCACGTTGTGAATAATGTGGATCCTCATCTAGGAGCTGAATACCAGAACCAGCTGTTTGGTATTCTCGGAATTAACGAGGACAAGGTGAACGAGTGTTGCAAGCTGATGTTGGAAGTGTGGTCGGGGTACGACCAGGGGAAGAAGCAATGCGCGAAACGCAAGTTTGGGTCGGTTCCTGGTAGCCCAAACGGCGTAATGGATGTGTCGTTTAGCTGTGATAGCTCCAATGACTCGTGGGCAGTAGCTGCTTCTGTGTCTTCCTCACCAGAACCTTTGTCTAAGAAGACTAGGACTCAAGACCATTCCAACTCGCATTTTCTCAGCATTACTCGCTAG 1104 0.4656 MANHHHHPHQKSLFDTLYCSEEHWEEHVGQDELEQTEHVYGCDYISANTSTTSTIINTPPTLFENDMFCDEEELPSLLSKEQHNPLFTFLQSHPLLDCSRREAVEWMLKVNAHYSFSALTAVLAVNYFDRFLFSFRFQNGKPWMTQLAAVACLSLAAKVEETQVPLLLDLQVEDSRYLFEAQTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDHLCWELLKRCQGVLLSLLGDSRFMSYLPSVLANATMMHVVNNVDPHLGAEYQNQLFGILGINEDKVNECCKLMLEVWSGYDQGKKQCAKRKFGSVPGSPNGVMDVSFSCDSSNDSWAVAASVSSSPEPLSKKTRTQDHSNSHFLSITR* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1494 367 PANTHER CYCLINS 10 353 IPR039361 -
Apr5g1494 367 PANTHER CYCLIN D3.1 PROTEIN 10 353 - -
Apr5g1494 367 SUPERFAMILY Cyclin-like 203 313 IPR036915 -
Apr5g1494 367 Gene3D - 201 290 - -
Apr5g1494 367 CDD CYCLIN 99 192 IPR013763 -
Apr5g1494 367 SMART cyclin_7 105 193 IPR013763 -
Apr5g1494 367 MobiDBLite consensus disorder prediction 342 367 - -
Apr5g1494 367 ProSitePatterns Cyclins signature. 100 131 IPR006671 -
Apr5g1494 367 SUPERFAMILY Cyclin-like 70 200 IPR036915 -
Apr5g1494 367 Gene3D - 93 200 - -
Apr5g1494 367 Pfam Cyclin, N-terminal domain 89 200 IPR006671 -
Apr5g1494 367 Pfam Cyclin, C-terminal domain 202 327 IPR004367 -
Apr5g1494 367 SMART Cyclin_C_2 202 330 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1494 Apr-Chr5 18901001 18902810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1494 66 357 Core Cell Cycle Gene Families AT5G67260 51.333 2.92e-90 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1494 5 18901001 18902810 Apr3g0108 3 1892063 1893896 ECH
Apr5g1494 5 18901001 18902810 Apr7g0880 7 15824362 15826139 ECH
Apr5g1494 5 18901001 18902810 Apr8g2468 8 34690746 34692531 ECH
Apr5g1494 5 18901001 18902810 Apr5g1494 5 18901001 18902810 ECH
Apr9g0393 9 5412460 5428171 Apr5g1494 5 18901001 18902810 PCT