Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1490 ATGGGTTCCGCAAAGAAAGAATTGGATCGGATAAAAGGGGCATGGAGCCCCGAAGAGGACGAAGCGTTGCAGAGACTGGTTGACACTTACGGGCCTAGAAACTGGACTCTCATAAGCAAATCCATTCCCGGTCGCTCCGGTAAGTCATGCCGGTTACGCTGGTGCAACCAGCTATCCCCTCAGGTCCAGCACAGAACATTCACTCCGGAGGAAGACCAAACCATCGTCAAAGCGCATGCAAGGTTCGGTAACAAGTGGGCCACCATAGCTCGCCTCCTCCCTGGCCGCACCGACAACTCCATCAAGAACCATTGGAATTCAACCCTCAAGAGGAAATGCCCCGCCATCGCTCAACACCCCCCTCCCAAAAGATCCGCCACTGTCTCGGGTCAACCCGTCACTCCCAGCTCTCCATCCGGATCCGATTTCAGCGATTCTACTTTGCCCCCTATTTCTCCCACTCCCATCCAGGTTTACAAACCGCTTGCCGAAACTGCGTCTTCGGTCACCGATCCACTCACTTCACTCAGCTTATCTCTACCCGGATCCGATTCATCCGACGGGTCAGATCCGAATCAGAATCAAGTGTCCAGTTGTAGTGCCAATCCCGTCAAAGAGATTAAATCGGGACCGAGTGAACAATTAGGTTCTGGAAAGCACGTGTTTAGCGAAGAGTTGCTGAACGGGATGCAAGAGATGATTCGAATGGAAGTTAGGAACTACATGTCTGGATTGGAGCGTAATGGTTTGTGTTTGCAAACACAATCGATTAGAAACTCCGTCATTAAGCGCATGGGAATTGACAGGGTCGAATAG 816 0.5159 MGSAKKELDRIKGAWSPEEDEALQRLVDTYGPRNWTLISKSIPGRSGKSCRLRWCNQLSPQVQHRTFTPEEDQTIVKAHARFGNKWATIARLLPGRTDNSIKNHWNSTLKRKCPAIAQHPPPKRSATVSGQPVTPSSPSGSDFSDSTLPPISPTPIQVYKPLAETASSVTDPLTSLSLSLPGSDSSDGSDPNQNQVSSCSANPVKEIKSGPSEQLGSGKHVFSEELLNGMQEMIRMEVRNYMSGLERNGLCLQTQSIRNSVIKRMGIDRVE* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1490 271 MobiDBLite consensus disorder prediction 112 155 - -
Apr5g1490 271 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Apr5g1490 271 SMART sant 11 60 IPR001005 -
Apr5g1490 271 SMART sant 63 111 IPR001005 -
Apr5g1490 271 MobiDBLite consensus disorder prediction 173 219 - -
Apr5g1490 271 Pfam Myb-like DNA-binding domain 15 74 - -
Apr5g1490 271 MobiDBLite consensus disorder prediction 173 207 - -
Apr5g1490 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 58 IPR017930 -
Apr5g1490 271 Gene3D - 66 112 - -
Apr5g1490 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Apr5g1490 271 PANTHER MYB PROTEIN-RELATED 6 240 - -
Apr5g1490 271 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Apr5g1490 271 CDD SANT 14 56 IPR001005 -
Apr5g1490 271 MobiDBLite consensus disorder prediction 124 153 - -
Apr5g1490 271 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Apr5g1490 271 Gene3D - 11 63 - -
Apr5g1490 271 CDD SANT 66 109 IPR001005 -
Apr5g1490 271 PANTHER TRANSCRIPTION FACTOR MYB73 6 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1490 Apr-Chr5 18865251 18866650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1490 9 271 MYB Transcription Factor Family AT5G67300 48.852 6.66e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr5g1490 Myb_DNA-bind_6 1.4e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1490 5 18865251 18866650 Apr3g0105 3 1838531 1839759 ECH
Apr5g1490 5 18865251 18866650 Apr7g0876 7 15795028 15797167 ECH
Apr5g1490 5 18865251 18866650 Apr5g1490 5 18865251 18866650 ECH
Apr9g0390 9 5287413 5288667 Apr5g1490 5 18865251 18866650 PCT