Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1467 ATGGCTTTGGAAGCTCTCAAATCACCCACCACACCTACACCTTCCTTTACTCCCTTTGAAGAACCCAATCTCAGCTACCTAGAAGCACCGTGGGCCAAGCGAAAGCGCTCTAAGCGTCCCCGCATGGACCCTCCCTGCACTGAAGAAGAGTACTTAGCTCTCTGTCTCATCATGCTCGCTCGCGGCGGCGCAGGCGGAGTCTCCACCGCCAAACCTGCTCTCTCCGATAACGAGTCGGCGCCGCTACCCGCAGCCAATCTCAGCTACAAATGCTCTGTGTGCAACAAAGCCTTCTCCTCTTACCAAGCGCTGGGTGGACACAAGGCCAGTCACCGGAAATTCGCCGGCGCCGCCGAGGATCACTCGACCTCCTCAGCCGTGACTACCAGTTCTGCGTCGAACGGTGGTGGTAGGTCCCACGAGTGTTCGATCTGCCACAAGTCGTTCCCCACAGGACAAGCCTTGGGAGGACACAAGCGTTGCCACTACGAAGGCGGTGGCGGTGGCAGCAGCGCCGTAACTGCCTCGGAAGGAGTGGGGTCCACCCACACAGGGAGCCACAGCCACCACCGTGAGTTCGATCTGAACCTCCCAGCTTTTCCAGATTTCTCAACAAGGTTCTTCGCAGACGACGAGGTTTCAAGCCCTCTACCATCGAAGAAGCCTCGTCTTAATTTGACCATACCCAAGATTGAAATCCCTCAGTACTAA 711 0.5696 MALEALKSPTTPTPSFTPFEEPNLSYLEAPWAKRKRSKRPRMDPPCTEEEYLALCLIMLARGGAGGVSTAKPALSDNESAPLPAANLSYKCSVCNKAFSSYQALGGHKASHRKFAGAAEDHSTSSAVTTSSASNGGGRSHECSICHKSFPTGQALGGHKRCHYEGGGGGSSAVTASEGVGSTHTGSHSHHREFDLNLPAFPDFSTRFFADDEVSSPLPSKKPRLNLTIPKIEIPQY* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1467 236 SUPERFAMILY beta-beta-alpha zinc fingers 89 162 IPR036236 -
Apr5g1467 236 MobiDBLite consensus disorder prediction 116 137 - -
Apr5g1467 236 Pfam C2H2-type zinc finger 140 163 - -
Apr5g1467 236 Pfam C2H2-type zinc finger 89 113 - -
Apr5g1467 236 PANTHER ZINC FINGER PROTEIN ZAT10 1 227 - -
Apr5g1467 236 Gene3D Classic Zinc Finger 87 162 - -
Apr5g1467 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Apr5g1467 236 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Apr5g1467 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 162 IPR013087 -
Apr5g1467 236 SMART c2h2final6 89 111 IPR013087 -
Apr5g1467 236 SMART c2h2final6 140 162 IPR013087 -
Apr5g1467 236 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 227 IPR044653 GO:0003700
Apr5g1467 236 MobiDBLite consensus disorder prediction 1 21 - -
Apr5g1467 236 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Apr5g1467 236 MobiDBLite consensus disorder prediction 121 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1467 Apr-Chr5 18708294 18710446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1467 1 233 C2H2 Transcription Factor Family AT1G27730 53.279 4.72e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr5g1467 zf-C2H2_6 2.7e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1467 5 18708294 18710446 Apr8g2416 8 34354766 34356214 ECH
Apr5g1467 5 18708294 18710446 Apr7g0006 7 541471 541935 ECH
Apr5g1467 5 18708294 18710446 Apr5g1467 5 18708294 18710446 ECH
Apr9g0372 9 5004783 5006232 Apr5g1467 5 18708294 18710446 PCT