Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1462 ATGGAAACAGATATTCCGCCAAACTACTCCTACATGGTGCAAACTATCAACGACAATTCCTCTTCCGCTTTCAGCGACTGCAACAGTGACAGATCCTGTGAATTCCCCACCGCATCTTCCCAAAGCCGACGCCTCCTAATCGCTTGCGCTTCCGAGAATTCCGACGAGTTCATTCGTCAGCTCGTTCTCAATCTCGACTCCTGTTCCATTGAAGAACAGAAACAAGCCACCATGGAAATCAGGTTACTCGCCAAGAACAAGCCAGATAACCGCCTCAAAATCGCCAAAGCCGGCGCTATTAGCCCCATGGTTTCGCTCATTTCATCACCGGACCCTCAGCTGCAAGAGTACGTGGTTACCGCGATTCTGAATCTCTCGCTCTGCGACGAGAACAAAGACCTCATCACTTCGTTGGGAGCGATTAAGCCTCTGGTGGGAGCGCTCAAGAGAGGGACTCCAACGGCGAGAGAGAACGCAGCCTGCGCGTTGCTTCGTCTGGCGCAGAAGGAGGAGAACAAGGTGGCGATAGGAAGGGCGGGGGCGATTCCAGCGCTGGTGAATCTTCTAGAAGGAGGAGCATTCCGCGGGAAGAAAGACGCGTCGACGGCGCTGTACGCGCTATGTTCGGTGAGGGAGAACAAGGTGAGGGCAGTGAGAGCGGGGATTATGAAGGTGTTGGTGGAGCTGATGGCGGATTTGGCGTCGAACATGGTGGATAAGGCGGCGTGCGTGTTGAGCGTGCTGGTGTCGGTGGGGGAAGCGAGGAGGTCGTTGGTGGCAGAAGGAGGGATTCCGGTGTTGGTGGAAATTGTGGAGGTGGGGTCTCAGAGGCAGAAAGAAATCGCGGTGGTTATCTTGTTGCAGATTTGCGAGGACAGTGTGGCGTACCGTACTATGGTGTGCCACGAAGGTGCGATTCCTCCCTTGGTTGCTCTGTCTCAGTCCGGCACCAAACGCGCCAAGCAAAAGGCGGAGACACTGATTGAGCTTCTACGGCAACCAAGATCCGACAATGGCGCTGTCCGTACCTCGGAAATGTCAGCATAA 1047 0.5482 METDIPPNYSYMVQTINDNSSSAFSDCNSDRSCEFPTASSQSRRLLIACASENSDEFIRQLVLNLDSCSIEEQKQATMEIRLLAKNKPDNRLKIAKAGAISPMVSLISSPDPQLQEYVVTAILNLSLCDENKDLITSLGAIKPLVGALKRGTPTARENAACALLRLAQKEENKVAIGRAGAIPALVNLLEGGAFRGKKDASTALYALCSVRENKVRAVRAGIMKVLVELMADLASNMVDKAACVLSVLVSVGEARRSLVAEGGIPVLVEIVEVGSQRQKEIAVVILLQICEDSVAYRTMVCHEGAIPPLVALSQSGTKRAKQKAETLIELLRQPRSDNGAVRTSEMSA* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1462 348 Gene3D - 253 333 IPR011989 -
Apr5g1462 348 SUPERFAMILY ARM repeat 54 331 IPR016024 -
Apr5g1462 348 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 339 - -
Apr5g1462 348 Gene3D - 172 252 IPR011989 -
Apr5g1462 348 Gene3D - 44 171 IPR011989 -
Apr5g1462 348 Pfam Armadillo/beta-catenin-like repeat 170 208 IPR000225 GO:0005515
Apr5g1462 348 Pfam Armadillo/beta-catenin-like repeat 88 126 IPR000225 GO:0005515
Apr5g1462 348 PANTHER U BOX DOMAIN-CONTAINING 1 339 - -
Apr5g1462 348 SMART arm_5 169 209 IPR000225 GO:0005515
Apr5g1462 348 SMART arm_5 210 250 IPR000225 GO:0005515
Apr5g1462 348 SMART arm_5 251 291 IPR000225 GO:0005515
Apr5g1462 348 SMART arm_5 293 333 IPR000225 GO:0005515
Apr5g1462 348 SMART arm_5 87 127 IPR000225 GO:0005515
Apr5g1462 348 SMART arm_5 128 168 IPR000225 GO:0005515
Apr5g1462 348 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 98 140 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1462 Apr-Chr5 18670260 18672876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1462 39 338 U-box Gene Family AT2G23140 48.000 2.29e-82 261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0367 9 4909095 4911324 Apr5g1462 5 18670260 18672876 PCT