Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1456 ATGTTGTGCGCTTGCTCCGGCGAGCAATTCAAATTCGAAGAGCCGCCACGGTCGCCGGAGTCTCTCGCCACGAGGGATTTCTCCGCCAGTGGGCTTTCTTCGAGGACTGGGGAATGGGAACCGAAATTCGATGAAACGCAAGTTGAAGAAGCTGAATCTACTCTGAAGGAAGCTCTTTCCTTAAACTACGAGGAGGCTAGGGCTTTGCTAGGGAGGCTTGAATACCAAAGAGGGAACTTCGATGCTGCTCTTCAAGTGTTTCAGGGTATAGACATTAAGGGTTTGACCCCGAGGATGATCAAGGCAATTGCTGAAAGAACCAAGCAAAGAAAACCACGTTCGAAGGCTGATTTTATTGTTCCGAATGTGATGTCATTGCATTCGGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAAATCATTAGAGGAACTTGGGCGATACATTGAGGCTGCAAAGGAGTGCAGAATAATTCTTGATACAGTTGAATCTGCCCTTCCTAATGGAATGCCTGAGGGTATTGGTGGAGATTGTAAGTTGCAAGAGATGTTCCATAAAGCATTGGAGTTACTTCCAAGCTTATGGATCAATGCAGGCTTTCTTGATGAAGCTGTCATGGCATATCGTTGTGCTCTGGTCAAGCCATGGAATTTAGAGCAACGAAGGTTGGCTGGTGTACAAAAAGATTTAGCTACAATGCTACTCTATGATGGTGTTGAAACAACACCCAAGAGTAATGTTGAAGAAGCAATACTTTTGCTATTAATTCTCATGAGCAAGGTGGCAATTCAGGAAATAGACTGGGATGCTGAAATAATGGATCATCTCACATTTGCGCTTTCAGTCACTGGGATGTACGAGTTATTGGCAGATCATGTAGAACAGATTCTTCCTGGTATATATAATCGAGTTGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACATAACGAAGTAGCGTTGAATCTTTTGAAAAAGGCTTGTGGCAGTTCTGAAGCAAAGCATAGACTCCATTTTCCTTCATTTTTGTTTGGAGCAGAACTCTGTTCCCAAGATCCTCATCATGCTCACGAAGGCATTAAATTTTCACATGAAGTTATTGATCTAGCTAAGCACCAAAACAAGCATTTTTTGGGTCAAGGTCACAAATTTCTTGGTATTTGCTATGGGGCTGCAGCTAGAACTTCTGTACTGGATTCTGAAAGAAGTATATTTCAACGAGAGTCTTTGAACTTTCTAAACTGTGCTGCTGTAAATGGAAATGGTGACCCAGAAGCAATATTCAGCCTTGGACTGGAAAATGCAATTCAAAGAAATCTGGATGCGGCTTACAACAATGTAATTATGTACTCAGATGTAATTGTTGGCAGTTCAAGAGGTTTGCAGTTGTTAGCACTCATAGTATCAGCACAACAGCGGTTTAAGGATGCTGAAACAATAGTTGATTTTGCTTTAGACGAAGCTGGGAGGATGGATCAACTGGAACTTCTAAGATTGAAAGCAGTATTTCAAATTGCTCAGCAGCAACCAAAGCAAGCCATAGAGACATATAGGATCTTGCTGGCATTAATTCAAGCCAAAAAGGAGCTTTGGATGCAAGTTAACAGCTTTGATCAAGCACAAGCATTCAGACATGAGGCATTAACTGAAAGGAAGTTAGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATAAGGATGTCGGTTCCTTGCTTGATGCAATAGCTTGTGTTGATAAAGCCCAGTTGATAGAATTTTTTTCTCCAAGAAGTTGGCATATTACAGGGATGCTGCTTGAAGCTCAATCATTATATAAAGAGGCATTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCAGTATCATTTCAGCTGCAGAATTGTTGCTTAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGCTTTTTAATGAATGCTCTGCGGTTAGAACCTACAAATCATGATGCTTGGTTCAACCTTGGATTGATTTCTAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAGCTAAAGCTTTCTGCCCCGGTGCATAAATTTGAGTAA 2109 0.4144 MLCACSGEQFKFEEPPRSPESLATRDFSASGLSSRTGEWEPKFDETQVEEAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTPRMIKAIAERTKQRKPRSKADFIVPNVMSLHSVSLLLEAILLKAKSLEELGRYIEAAKECRIILDTVESALPNGMPEGIGGDCKLQEMFHKALELLPSLWINAGFLDEAVMAYRCALVKPWNLEQRRLAGVQKDLATMLLYDGVETTPKSNVEEAILLLLILMSKVAIQEIDWDAEIMDHLTFALSVTGMYELLADHVEQILPGIYNRVERWYFLALCYSAAGHNEVALNLLKKACGSSEAKHRLHFPSFLFGAELCSQDPHHAHEGIKFSHEVIDLAKHQNKHFLGQGHKFLGICYGAAARTSVLDSERSIFQRESLNFLNCAAVNGNGDPEAIFSLGLENAIQRNLDAAYNNVIMYSDVIVGSSRGLQLLALIVSAQQRFKDAETIVDFALDEAGRMDQLELLRLKAVFQIAQQQPKQAIETYRILLALIQAKKELWMQVNSFDQAQAFRHEALTERKLEMEAWQDLATIYKDVGSLLDAIACVDKAQLIEFFSPRSWHITGMLLEAQSLYKEAFVSFSVSLSIEPDYIPSIISAAELLLKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLISKMEGSLQQAAEFFQAAYELKLSAPVHKFE* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1456 702 SUPERFAMILY TPR-like 45 330 IPR011990 GO:0005515
Apr5g1456 702 Gene3D Tetratricopeptide repeat domain 644 700 IPR011990 GO:0005515
Apr5g1456 702 SUPERFAMILY TPR-like 536 693 IPR011990 GO:0005515
Apr5g1456 702 Gene3D Tetratricopeptide repeat domain 467 643 IPR011990 GO:0005515
Apr5g1456 702 PANTHER PROTEIN NPGR1 1 701 - -
Apr5g1456 702 Coils Coil 56 76 - -
Apr5g1456 702 PANTHER PROTEIN NPG1 1 701 IPR043376 -
Apr5g1456 702 SMART tpr_5 498 531 IPR019734 GO:0005515
Apr5g1456 702 SMART tpr_5 663 696 IPR019734 GO:0005515
Apr5g1456 702 SMART tpr_5 462 495 IPR019734 GO:0005515
Apr5g1456 702 SMART tpr_5 133 166 IPR019734 GO:0005515
Apr5g1456 702 SMART tpr_5 305 338 IPR019734 GO:0005515
Apr5g1456 702 SMART tpr_5 593 626 IPR019734 GO:0005515
Apr5g1456 702 SMART tpr_5 559 592 IPR019734 GO:0005515
Apr5g1456 702 ProSiteProfiles TPR repeat profile. 663 696 IPR019734 GO:0005515
Apr5g1456 702 Pfam Tetratricopeptide repeat 664 693 IPR019734 GO:0005515
Apr5g1456 702 SUPERFAMILY TPR-like 425 586 IPR011990 GO:0005515
Apr5g1456 702 MobiDBLite consensus disorder prediction 11 40 - -
Apr5g1456 702 Gene3D Tetratricopeptide repeat domain 35 342 IPR011990 GO:0005515
Apr5g1456 702 Pfam Tetratricopeptide repeat 47 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1456 Apr-Chr5 18622178 18625895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1456 1 701 Calmodulin-binding Proteins AT1G27460 59.773 0.0 860
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1456 5 18622178 18625895 Apr5g1456 5 18622178 18625895 ECH
Apr9g0364 9 4855016 4858915 Apr5g1456 5 18622178 18625895 PCT