Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0974 ATGCCAGGGAAACCTGACACTGATGACTGGCGTGGAGAGCAGATTCAGTTTCAAACTTCCGTTTACTCTCATCATCAACCTTGGTGGCGTGGAGTCGGGGAAAATGCCTCCAAGTCACCTTCATCTGTTCACTTAAATGGTTCAATCATGAATGGTGTCACAGGGTCCGAGACCAATGAAGATTTGGCTGAGAGGGTTGATTTCAATAGGCAAAGGCATCCTATGGTTTCTCCTTCACTCTCTGGAACTGATAAGTCAGGTGGGGGAGTTGCCAAAGAGTACCAAAGCATCAAGGATGCCATGTCCTCAACCCCATTTACAGTGGGCAAACACATTGGTCCAAATTCCCAGATGGAATTTGTTGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGTATGGTCAAATCTTGACTACTTATGGGCAGCAAGTTATGATAAACCCTCAGGTATACGGAATTCATCATGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTATATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCTCGGGCAAAGGCTGAGCTTGAAAAGAAAGTGATTAAAGCTAGAAAGCCATATCTTCATGAATCCCGTCACCTACATGCTATGAGAAGGGCAAGAGGTAACGGTGGTCGCTTTCTTAATACAAAGAAGCTCGAAAATAACAACTCTAATACCACTTTAGATAAAGACAACAGTATTGGTGCAAACCCTTCAACAAATTCACCTGCCACTCAACATTTTCTTACCAACAATGAGAATCTAGGCTCATCACATGCATCACAGTGCATAGTTCAAGACATGCACAGGATGCATAGTTTCAATATTGGTTTCCATGACGGAAATGGTCTTTCAGCACTGTACCATTCACAAGCAAATGGAAAAAAGGAAGGAGGTTACTTTGGTAAAGAGAGGGATCCTAATGGTGAAGACGAAGGACGTTATTTCATCCAACTTATGATGCTGTATTGA 1008 0.4266 MPGKPDTDDWRGEQIQFQTSVYSHHQPWWRGVGENASKSPSSVHLNGSIMNGVTGSETNEDLAERVDFNRQRHPMVSPSLSGTDKSGGGVAKEYQSIKDAMSSTPFTVGKHIGPNSQMEFVGHSVVLTSPYSDAQYGQILTTYGQQVMINPQVYGIHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKARKPYLHESRHLHAMRRARGNGGRFLNTKKLENNNSNTTLDKDNSIGANPSTNSPATQHFLTNNENLGSSHASQCIVQDMHRMHSFNIGFHDGNGLSALYHSQANGKKEGGYFGKERDPNGEDEGRYFIQLMMLY* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0974 335 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 21 320 - -
Apr5g0974 335 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 21 320 IPR001289 GO:0003700|GO:0006355
Apr5g0974 335 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677|GO:0016602
Apr5g0974 335 SMART cbf3 167 228 IPR001289 GO:0003700|GO:0006355
Apr5g0974 335 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700|GO:0006355
Apr5g0974 335 MobiDBLite consensus disorder prediction 227 265 - -
Apr5g0974 335 MobiDBLite consensus disorder prediction 224 265 - -
Apr5g0974 335 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700|GO:0006355
Apr5g0974 335 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700|GO:0006355
Apr5g0974 335 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700|GO:0006355
Apr5g0974 335 Gene3D - 168 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0974 Apr-Chr5 14281257 14288655 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Apr5g0974 CBFB_NFYA 2e-26 No_clan