Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr5g0972 | ATGTACATCAAGGAGATTTGCTTGGAAGGCTTCAAATCCTACGCCACCCGAACCGTCGTTCCGGGCTTCGACCCCTTCTTCAACGCCATAACCGGCTTGAACGGTTCCGGAAAATCCAACATTCTCGATTCTATTTGCTTCGTTCTCGGCATCACCAACTTGCAGCAGGTTCGGGCCTCCAATCTTCAGGAACTCGTGTACAAGCAAGGCCAAGCAGGAATCACCAAAGCCACCGTTTCGATTGTGTTTGATAATTCCGATAGAAGTCGAAGCCCTCTTGGATATGAAGACCATTCGGAGATTACAGTAACAAGACAGATAGTGGTTGGAGGGAGGAACAAGTATTTGATCAACGGGAAGCTTGCACAGCCTAGTCAAGTTCAAAACCTTTTTCATTCAGTGCAACTAAATGTTAATAATCCTCATTTCCTCATAATGCAAGGACGCATCACAAAGGTTTTAAATATGAAACCGCCAGAGATATTATCTATGCTTGAGGAAGCTGCAGGGACGAGAATGTATGAGACAAAAAAAGAGGCGGCTCTAAAAACACTTGAGAAGAAGCAGAGTAAGGTTGATGAGATTAACAAGCTTCTTGATCAGGAGATACTGCCTGCCCTGGAGAAGTTAAGGAAAGAAAAGACACAATACATGCAATGGGCTAATGGTAATGCTGATTTAGATAGGCTGAGAAGATTTTGTATTGCTTATGAGTATGTTCAAGCAGAGAGGATTAAAGACAATGCTGCTTCGGAGGTGGAACAAGTAAAAGCCAAGATAACTGAGATTGATGACACTGCTAAGACAACTCAGGTGGAAATAAAGGAAATGGAGACCAAAATAGCTCAGTTGACTGCTGAAAAGGAAGCAAACATGGGCGGGGAAGTGAAATCTCTGTCAGATAAGGTAGATGCACTCTCCCGGAATCTTGTGAGGGAAACGTCTATACTAAATAATAAAGAAGACACTTTGAGGAGTGAAGAAGCCGACAAAGAAAAAATTGTTAAAAATATTGAAGAATTGAAGCAATCTGTAGAAGATAAGGCCTCTGCTGTTAAAAAGGCTGAAGAGGGAGCAGCGGATCTGAAAGATAGAGTTGATGAGCTCTCAAAGAGCCTAGAGGAGCATGAAAAAGAATATCAGGGTGTTTTAGCTGGCAAGAGCAGTGGTAATGAGGAGAAATGCTTAGAGGATCAACTAAGTGATGCAAAGGTAGCAGTTGGGAGTACTGAAACAGAATTGAAACAGCTGAAAGCCAAAATTAGCCATTGTGAAAAGGAATTGAAGGAGAAAACAAATCAATTAAGGTCAAAACGTGAAGAAGCTATTGCTGTAGAAAATGAACTCAACACTAGACAAAAAGATGTGGGGAGTGTTAGAATGGAATTGGAGTCTCTTCCTTATAAAGAGGGTGAAATGGAAGCTTTACAAAAGGAGCGTACAACTGAGATGGATTGTGTGCAAAAGTGGAAGGATGAAATACGCAATATTTCAGCATACCTGGCAAATGTTGAATTTACATACCGTGATCCTGTCAAGAACTTTGATAGGTCAAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACGATGACTGCCCTGGAGGTTACAGCTGGTGGAAAGTTGTTTAATGTTGTTGTTGACACAGAAAATACTGGAAAACAACTACTACAGAATGGGAATCTTAAAAGAAGAGTGACAATTATACCTTTGAACAAAATACAATCCAATATTGTTCCTTCCAGAGTTCAACAAGCTGCCGTGGGCAAGGAGAATGCTGAAGTAGCACTTTCTCTGGTTGGTTATGAAGAAGAATTGAAGAGTGCAATGGAATATGTATTTGGTTCAACCTTTGTTTGCAAAACTGTTGATGCTGCAAAGGAGGTAGCATTTAATCGGGATATTCACACCACAAGTGTCACTCTTGAAGGAGATATATTTCAGCCAAGTGGTCTTCTGACTGGTGGAAGTCGGAAGGGCAGTGGTGATCTTTTGAGGCAACTTCATGCTTTGGCCGAGGCTGAGTCAAAACTTTCAGTGCATCAAAGAAGGTTATCAGAGATTGAGGCAAAGATCTCCAAGCTCCTTCCTCTTCAGAAAAAATTTAAAGATCTCAAAGCACAATTAGAACTCAAGTCATATGATCTTTCATTGTTTCAGAGCAGAGCTGAGCAAAATGAGCATCATAAGCTTGGAGAATTAGTGAAGAAGATTGAGCAAGAACTTGAAGAAGCAAAATCTACAGTCAAAGACAAGCAACTTCTATATGAGGACTGTGTGAAAACTGTTTCATCACTTGAGAAATCTATCAGAGAACATGACAATAACAGAGCAAGTAGGCTCAAAGGCTTGGAGAAAAAGATAAAGTCAATCAAATCCCAGATGCAGTCATATTTAAAAGATCTGAAGGGACATGATAGTGAAAAGGAGAGGCTTGTAATGGAAATGGAAGCTGTTGTCCAGGAGCAAACATCCTTTGAGAATCAGTTAGCATCATCAAGAATGCTGATCAATAATCTTGCCTCAGAAGTGGAAGAACAAAGATCTGCGGTTACTGCTGCACGGAATAATCTTGATCAAGTTCAGTCACAGCTGAATTCAGTTCGCCTGAAAATGAAGGAATGTGATACAGAAATCAGTGCTATTGTTAAAGAGCAGCAAAAGCTTGAACATAAAATTAGTGAGAGTAGTCTTCAAAGGAAGAGGATGGAAAATGAGGTGAAACGGATGGAGATGGAACAGAAAGACTGTTCTGAGAGAGTGGAAAAATTAATACAGAAGCATGCATGGATTGCTTCTGAAAAACAGTTATTTGGTAGAGGTGGGACTGATTATGATTTTTCTTCCCGTGATCCCAGTAAAGCAAGGGAAGAACTTGAGAAGCTTCATGCTGAACAATCTGGGCTTGAGAAAAGGGTAAACAAGAAAGTAATGGCAATGTTTGAGAAGGCAGAAGACGAGTACAATGATTTGATGTCCAAAAAAAACATAATTGAGAATGACAAGTCTAAAATCAAGAAGGTGATTGAAGAACTAGATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTGAATAATGATTTTGGATCCATCTTTTCTACACTATTGCCTGGAACAATGGCTAAGTTAGAACCCCCTGAGGGATGTAGCTTTCTTGATGGTCTTGAGGTTCGTGTTGCATTTGGAGGTGTGTGGAAACAGACATTGTCTGAATTAAGTGGAGGTCAGCGATCACTGCTTGCACTCTCTCTGATTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAGGTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATTGGGAGAATGATTAAGGCTCACTTTCCACACTCTCAGTTTATTGTGGTTTCACTGAAGGAAGGCATGTTCAATAATGCAAATGTTCTTTTCCGGACAAAATTTGTGGACGGCGTTTCAACTGTACAGCGAACGGTTGCAGCTAAACAAAAGTGA | 3519 | 0.4066 | MYIKEICLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRSRSPLGYEDHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKEKTQYMQWANGNADLDRLRRFCIAYEYVQAERIKDNAASEVEQVKAKITEIDDTAKTTQVEIKEMETKIAQLTAEKEANMGGEVKSLSDKVDALSRNLVRETSILNNKEDTLRSEEADKEKIVKNIEELKQSVEDKASAVKKAEEGAADLKDRVDELSKSLEEHEKEYQGVLAGKSSGNEEKCLEDQLSDAKVAVGSTETELKQLKAKISHCEKELKEKTNQLRSKREEAIAVENELNTRQKDVGSVRMELESLPYKEGEMEALQKERTTEMDCVQKWKDEIRNISAYLANVEFTYRDPVKNFDRSKVKGVVAKLIKVKDRSTMTALEVTAGGKLFNVVVDTENTGKQLLQNGNLKRRVTIIPLNKIQSNIVPSRVQQAAVGKENAEVALSLVGYEEELKSAMEYVFGSTFVCKTVDAAKEVAFNRDIHTTSVTLEGDIFQPSGLLTGGSRKGSGDLLRQLHALAEAESKLSVHQRRLSEIEAKISKLLPLQKKFKDLKAQLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQELEEAKSTVKDKQLLYEDCVKTVSSLEKSIREHDNNRASRLKGLEKKIKSIKSQMQSYLKDLKGHDSEKERLVMEMEAVVQEQTSFENQLASSRMLINNLASEVEEQRSAVTAARNNLDQVQSQLNSVRLKMKECDTEISAIVKEQQKLEHKISESSLQRKRMENEVKRMEMEQKDCSERVEKLIQKHAWIASEKQLFGRGGTDYDFSSRDPSKAREELEKLHAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWIKVNNDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGGVWKQTLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAAKQK* | 1173 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr5g0972 | 1172 | PIRSF | SMC | 1 | 1152 | IPR024704 | GO:0005524|GO:0016887 | |
| Apr5g0972 | 1172 | PANTHER | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 | 1 | 1169 | - | - | |
| Apr5g0972 | 1172 | Coils | Coil | 239 | 287 | - | - | |
| Apr5g0972 | 1172 | Coils | Coil | 178 | 198 | - | - | |
| Apr5g0972 | 1172 | Coils | Coil | 400 | 448 | - | - | |
| Apr5g0972 | 1172 | Pfam | SMC proteins Flexible Hinge Domain | 518 | 635 | IPR010935 | GO:0005515|GO:0005524|GO:0005694|GO:0051276 | |
| Apr5g0972 | 1172 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 1149 | IPR027417 | - | |
| Apr5g0972 | 1172 | Gene3D | - | 992 | 1171 | IPR027417 | - | |
| Apr5g0972 | 1172 | Pfam | RecF/RecN/SMC N terminal domain | 2 | 368 | IPR003395 | - | |
| Apr5g0972 | 1172 | Pfam | RecF/RecN/SMC N terminal domain | 841 | 1158 | IPR003395 | - | |
| Apr5g0972 | 1172 | SUPERFAMILY | Smc hinge domain | 478 | 683 | IPR036277 | GO:0005515|GO:0005524|GO:0005694|GO:0051276 | |
| Apr5g0972 | 1172 | Coils | Coil | 676 | 696 | - | - | |
| Apr5g0972 | 1172 | SUPERFAMILY | Tropomyosin | 308 | 483 | - | - | |
| Apr5g0972 | 1172 | Coils | Coil | 979 | 1023 | - | - | |
| Apr5g0972 | 1172 | CDD | ABC_SMC2_euk | 1 | 156 | IPR027120 | GO:0005524|GO:0016887 | |
| Apr5g0972 | 1172 | Gene3D | - | 1 | 202 | IPR027417 | - | |
| Apr5g0972 | 1172 | PANTHER | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 | 1 | 1169 | - | - | |
| Apr5g0972 | 1172 | Coils | Coil | 317 | 379 | - | - | |
| Apr5g0972 | 1172 | Coils | Coil | 842 | 883 | - | - | |
| Apr5g0972 | 1172 | Gene3D | - | 577 | 664 | - | - | |
| Apr5g0972 | 1172 | Coils | Coil | 733 | 760 | - | - | |
| Apr5g0972 | 1172 | Coils | Coil | 786 | 806 | - | - | |
| Apr5g0972 | 1172 | Gene3D | - | 517 | 673 | - | - | |
| Apr5g0972 | 1172 | SMART | SMC_hinge_2 | 518 | 635 | IPR010935 | GO:0005515|GO:0005524|GO:0005694|GO:0051276 | |
| Apr5g0972 | 1172 | Coils | Coil | 891 | 932 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr5g0972 | Apr-Chr5 | 14249696 | 14263618 | Dispersed |