Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr5g0968 | ATGGGAAAGAACAAAGTGAAGGAAAATGGTGGCAAAGACTATTGCCCCTTAACCCTTTTTGTCTCCAACTTGCCCTACTCTTTTTCCAATTCTCAGCTGGAGGAGGCGTTCAGTGAGGTTGGACCTGTTAGGCGTTGCTTCATGGTCACACAGAAAGGTTCAGCCCAGCATCGTGGTTTTGGTTATGTCCAATTTGCTGTTGAGGAAGATGCTAACCGCGCTATTGAGCTGAAGAATGGTTCATCTGTTGGAGGCCGGAAAATTGTAGTGAAGCATGCGATGCCTCGTCCTCCCCGTGAAGAACGAAAGTCAAAACCAAATCAAGTAGGCAAGTCAGATGATCTCTTAAAGCCAATAGATGACGATGAAGACCGCAGATCATCTGCAGCAGGGAAGCCTGTTTCAGCTTTAAAGGAAGAAGAAGTACAAGTCACTAAAAAACAAAAGCACTCAAGGAAGCCCGTGGAAATGAAAAAATCAGCCCTTTGTAATGATGTAGCAGATGAGGGTGGTTTCTCAGATAAACAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCATAAATTCTGATATGGCTGAAGAAGTGCACTGCCAAGCCAGAGAGATTGACACTGTGTGTTGTATTAATTATCCTCTTTCAAGGAAAGATCTTGAGCAACATGGTCTCCTGCAAGATGGCTGTACTTTGGATGCTTCAGCTGTACTTTATACAAGTGTAAAATCAGCTCGAGCTTCTGTTGCAAGATTTCATAAAAAAGAGATAGGAGGGGGAACTGTTTGGGCTCGCCAACTGGGTGGAGAGGGCTCTAAGACTCAGAGATGGAAGCTTATTGTCAGAAACCTTCCCTTCAAGGCCAAAGAAAATGAAATAAGAGATATGTTTTCATCTGCAGGGTACGTGTGGGATATATTTATTCCACTCAAGTCAGACACAGGTATGTCTAAGGGTTTTGCATTCGTAAAATTCACCTGCAAGCTAGATGCGGAAAATGCCATTCAAAAGCTCAATGGATCTAAGTTTGCAAAACGTCTCATAGCTGTTGATTGGGCTGTTCCAAAACAGATATTTAGTAATGATGCCAATAATGCTCTTGCTCCAGAGAATGGGCTCCAAACGATGAGAGATGAGGATAGTAGTAGTGAGGGAGATGTTGAGCATGTTGGCAAACAATCTAGTCAAGGAGATGATAGTGATGCAGATTATTCTAGTGCCATGGAGGAGGAAAGTGCACCTCCTGAAGATAATTTTGATAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGCTTACATCCTCCAACAAAGGAACATCTGTAAATAATGATTCTATGTTGTCCAAAGAAAAGAAGGAGCCAAAAGCCAATGAAATTGTTGAGGATGCAGATGGTAAAGCATCGGATGAGTATGAAAAGGTTTCAGATGTTTCCAAGCCTGAAATTTCCACCAGAAGCAAGTCATCAGATCTTAAGCAAACAGAAGTAGATGATTTGCAGAAAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAATGAAGAAGTGAAACAAAGATTTTCTGGATTTGGGGAAGTAGAATACTTCCTTCCTGTTCTCCACCAAGTGACCAAGCGTCCAAGAGGCACTGGTTTTCTTAAATTTAAAACTGTAGAAGCAGCTAATACTGCAATTTCAGCTGCCAGTAATGCTTCTGGGCTGGGTATTTTACTGAAGGGTAGACCGTTAAAAGTCTTAAAGGCTTTGGATAAGAAATCAGCTCATGACAAGGAACTGGAAAAGGCAAAAAGTGAGGTTCATGACCACCGCAATCTTTATTTGGCTAAGGAAGGACTTATTCTTGAGGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGACATGTTAAAACGCCAAGAGTTGGAAAGAAAAAAGAGGACAAAGCTTCAATCTCCAAATTTTCACGTTTCAAGAACTAGACTCGTTATCTACAACTTACCAAAGTCAATGAATGAAAAAGAACTCAAGAACCTTTGCATTGATGCAGTAATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAGATGGAAAGAAAGGGAAGGTTGTTCAAGAACGCCATTCCCGTGGAGTTGCCTTCATTGAATTTTCAGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTATTAACAATAATCCTGAAACTTTTGGTCCTGAACATCGGCCAATTGTGGAGTTTGCTCTTGATAATGTTCAGACACTTAAACTTCGGAAAGCAAAGCTACAATCTCAGCGACAGGCTCCTCAAGATGACAACAAATTCATGCCTGGCATAGAAGTTTACACGCATGCAAATGACAAAAAACGAAAATCTCAAGAGCTTGATAAACCGGCAAAGGACCCAGAACTGACTACAAATGATGAATCTAGCGGTTCAGTGGCAAATGGAAAATCCCCTCAAGGACGCAAATCCAAAAGACACAAAGGCAACCATAAGGGTACAAGGGCTGAAATGTCATCACTGGAAGAAACACCAAAATCCTTGTCCAAAAAATCAAAGAACTACCAAGGTGGGCAGAATAATTATGGTACATCACTTGAAGGTCAAAACTCTGGCATTGACACTAGTAGAAGAAAATCAAGAAGCAAAGATGATGGATTTAGAAAACGGAAGATGCAAAACCAAGAACAAGCAGGCCAAAAGGTTTCTAAGAAACGGCCCAAGAAGAATAAAGATTCAGTAGGGAAGGACGTAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCAAAGTTCTCACACAAGAGTTCCCAAGAGAATGATGGAGATAAAAAATCTTCTAAACAGCTTAGAAAATGGTTTCAATCATAA | 2874 | 0.4092 | MGKNKVKENGGKDYCPLTLFVSNLPYSFSNSQLEEAFSEVGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGSSVGGRKIVVKHAMPRPPREERKSKPNQVGKSDDLLKPIDDDEDRRSSAAGKPVSALKEEEVQVTKKQKHSRKPVEMKKSALCNDVADEGGFSDKQRVARTVIFGGLINSDMAEEVHCQAREIDTVCCINYPLSRKDLEQHGLLQDGCTLDASAVLYTSVKSARASVARFHKKEIGGGTVWARQLGGEGSKTQRWKLIVRNLPFKAKENEIRDMFSSAGYVWDIFIPLKSDTGMSKGFAFVKFTCKLDAENAIQKLNGSKFAKRLIAVDWAVPKQIFSNDANNALAPENGLQTMRDEDSSSEGDVEHVGKQSSQGDDSDADYSSAMEEESAPPEDNFDKEADIARKVLNNLLTSSNKGTSVNNDSMLSKEKKEPKANEIVEDADGKASDEYEKVSDVSKPEISTRSKSSDLKQTEVDDLQKTVFISNLPFECDNEEVKQRFSGFGEVEYFLPVLHQVTKRPRGTGFLKFKTVEAANTAISAASNASGLGILLKGRPLKVLKALDKKSAHDKELEKAKSEVHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQELERKKRTKLQSPNFHVSRTRLVIYNLPKSMNEKELKNLCIDAVISRATKQKPVIRQIKFLKDGKKGKVVQERHSRGVAFIEFSEHQHALVALRVINNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQRQAPQDDNKFMPGIEVYTHANDKKRKSQELDKPAKDPELTTNDESSGSVANGKSPQGRKSKRHKGNHKGTRAEMSSLEETPKSLSKKSKNYQGGQNNYGTSLEGQNSGIDTSRRKSRSKDDGFRKRKMQNQEQAGQKVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSHKSSQENDGDKKSSKQLRKWFQS* | 958 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 375 | 394 | - | - | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 139 | 157 | - | - | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 850 | 873 | - | - | |
| Apr5g0968 | 957 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 501 | 584 | IPR000504 | GO:0003723 | |
| Apr5g0968 | 957 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 275 | 353 | IPR000504 | GO:0003723 | |
| Apr5g0968 | 957 | CDD | RRM2_RBM28_like | 276 | 352 | - | - | |
| Apr5g0968 | 957 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 17 | 95 | IPR000504 | GO:0003723 | |
| Apr5g0968 | 957 | PANTHER | RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED | 12 | 492 | - | - | |
| Apr5g0968 | 957 | PANTHER | RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED | 503 | 765 | - | - | |
| Apr5g0968 | 957 | CDD | RRM1_RBM28_like | 18 | 96 | - | - | |
| Apr5g0968 | 957 | Gene3D | - | 652 | 747 | IPR012677 | - | |
| Apr5g0968 | 957 | Coils | Coil | 586 | 606 | - | - | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 446 | 493 | - | - | |
| Apr5g0968 | 957 | SMART | rrm1_1 | 18 | 91 | IPR000504 | GO:0003723 | |
| Apr5g0968 | 957 | SMART | rrm1_1 | 276 | 349 | IPR000504 | GO:0003723 | |
| Apr5g0968 | 957 | SMART | rrm1_1 | 654 | 745 | IPR000504 | GO:0003723 | |
| Apr5g0968 | 957 | SMART | rrm1_1 | 502 | 580 | IPR000504 | GO:0003723 | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 874 | 895 | - | - | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 434 | 493 | - | - | |
| Apr5g0968 | 957 | CDD | RRM4_RBM28_like | 653 | 750 | - | - | |
| Apr5g0968 | 957 | PANTHER | RNA BINDING PROTEIN | 12 | 492 | - | - | |
| Apr5g0968 | 957 | PANTHER | RNA BINDING PROTEIN | 503 | 765 | - | - | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 86 | 157 | - | - | |
| Apr5g0968 | 957 | SUPERFAMILY | RNA-binding domain, RBD | 644 | 751 | IPR035979 | GO:0003676 | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 782 | 957 | - | - | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 373 | 418 | - | - | |
| Apr5g0968 | 957 | SUPERFAMILY | RNA-binding domain, RBD | 271 | 355 | IPR035979 | GO:0003676 | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 93 | 129 | - | - | |
| Apr5g0968 | 957 | Coils | Coil | 744 | 764 | - | - | |
| Apr5g0968 | 957 | SUPERFAMILY | RNA-binding domain, RBD | 501 | 672 | IPR035979 | GO:0003676 | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 782 | 803 | - | - | |
| Apr5g0968 | 957 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 653 | 761 | IPR000504 | GO:0003723 | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 804 | 819 | - | - | |
| Apr5g0968 | 957 | CDD | RRM3_RBM28_like | 501 | 582 | - | - | |
| Apr5g0968 | 957 | Gene3D | - | 2 | 108 | IPR012677 | - | |
| Apr5g0968 | 957 | Gene3D | - | 433 | 598 | IPR012677 | - | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 910 | 951 | - | - | |
| Apr5g0968 | 957 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 19 | 88 | IPR000504 | GO:0003723 | |
| Apr5g0968 | 957 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 277 | 346 | IPR000504 | GO:0003723 | |
| Apr5g0968 | 957 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 503 | 563 | IPR000504 | GO:0003723 | |
| Apr5g0968 | 957 | Gene3D | - | 262 | 402 | IPR012677 | - | |
| Apr5g0968 | 957 | SUPERFAMILY | RNA-binding domain, RBD | 17 | 105 | IPR035979 | GO:0003676 | |
| Apr5g0968 | 957 | MobiDBLite | consensus disorder prediction | 833 | 849 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr5g0968 | Apr-Chr5 | 14215787 | 14224099 | Transposed |