Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0967 ATGGAATCCGCTGTTGATGTATTAACAGCTAAACGCCTCTCTCCGACCGGGTTTTCTCTTGATGGACTTAAAAGACTGAAATTATCAAGTGATAGCCCGCCATACCCAGCTCATGATAAAATCGAACCAAAGACACCTCAGAATTCAAATGTTGTAGAATACAGTAACCCATTCGTAATATCTGATGTTCTGGATCGTTTAGAGAGTGGAAAGTTTGGAAGTGTCACAAAGGACATAGAGGCCCTTATAGCCCGGAAAATGCAAATACTGAGCCCTTACTTTGGAAAATATCCCAGACTTGTTAGTCAATTATTGAAAGTGGTAACGAACCATGACGAAGGAACTCCTAAGTGGGTACAAGTTACTGGTGTGTCAGATGAATTGGATCAAAAGGTCATAGATTTGGAGGGGGAGCATATAAAAAAGGATGTTCCTGCAGCACCAAATCCTGTTGTGATTATTGATTCAGATGAGGAAGATGATAATGATAAAAAATCTATTCTTTCATTTCATGAAGTCATGTTGCCAACAGTAGCTGCACCGTCTCCAGCATTGAAGATGATTGGGTATCACACACCCATTCCTTATCGTGGAGAAAGTGAAGATCTAAAAATTCAGACAAGTACTGATGAAAAAAATAAAGGTAAAGGTGTTTACATTGGTGTACAGGAAGGAGAAGATCATCAGGTCAATGCTGAAGATGATGGTCTAGATGATATTTGGAAGGAGATGTCGATGGCCATAGAATGTTCCAAGGATGTTTCCGAGAATCCTCTGCCGGATGAAGAAGTGAACAAAGATGAGGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGAGTTATCGACAGAGGAATTGAAACCATATTCGAGTTCCAGTACAAGGTTAAAAGGAGCACTAGAACTTATGCATCTGATTCATGGAATCCCAAAGAAAAAGATGTATTTGGAATTAATGTTGCTGAAGATGATCTCATGGTAACTGAAATCTCAGCACATCCTAGACACATGAAACAAATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAACCTTGCGGGTGACCATCCTGGGGGCTGCATCTTGGCCCATGCTCCTGGATCTGGTAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTTGGCAAGTATCCTAATGCTAGACCTCTAGTGGTGCTTCCTAAGGGAATATTGTCAACTTGGAAAAAGGAGTTCCAAACATGGCAAGTGGAAGATATACCATTATATGATTTTTACACTGTGAAGGCAGATAGCAGATCTCAACAACTTGAAGTGTTGAAGCAATGGATGGAGCAGAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGAACTAACAATACATCGATTTCTTGCCAAGAGATATTGCTTAAGGTTCCTTCAATTCTCATTTTAGACGAGGGACACACTCCAAGGAATGAAAATACTGATATGGTACAGTCCCTTGTGAAAGTACAAACACCTAGAAAAGTTGTACTGTCAGGAACACTTTATCAGAATCATGTCAGGGAGGTATTTAACATCTTAAATCTTGTGCGGCCAAGGTTTTTAAAGATGGAAACATCTAGGCCTATTGTCAGGCGCATTCATAGCAGAATACATATACCTGGTGTGAGAAGCTTCTTTGATTTAGTTGAAAACACTTTGCAGAAGGACACAGATTTTAAAAGGAAAGTCGCTGTCATACAAGATTTGCGTGAGATGACAAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCAGGTCTTGTTGATTTTACTGTGGTACTCAATCTTACCACTAGGCAGAGACAAAAGGTTGAGGAATTAAAAAAGTTATCTAGAAAGTTCAAAATATGTTCCGTTGGCAGTGCTGTCTATCTGCATCCTGAATTGAAAGCTATAGCAGAAAAATGTGGTGAGAATTGTATATCTGATAATATAATGGATGATCTAATTGAGAAACTAGATGTGAGAAATGGAGTGAAGTCGAAATTCTTTCGCAACATGCTAAATCTATGTGAATCAGCTGGGGAGAAGCTTCTGGTGTTTAGTCAATATCTCTTACCCTTGAAATATTTAGAGAGGTTCACTATGAAATGGAAAGGCTGGAGTCTTGGAAGAGAAATCTTTGTAATCTCAGGGGAATCAAGCTCTGAACACCGAGAATGGTCCATGGATAAATTTAACAATTCTCCTGATGCTAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGTATATCATTGGTTGGGGCATCCCGCATAATTATTTTGGATGTCCATCTCAATCCATCGGTTACTCGCCAAGCTATTGGTCGTGCATTCAGACCAGGGCAGATGAAGAAAGTATTTGTGTATCGGTTGGTAGCTGCTGATTCTCCTGAAGAGGAAGATCACAGCACTTGTTTCAAGAAGGAATTGATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGCGGTGATCGAGCTTTTGAATTTGAGGCAGTTGGTGTGAAAGAGTGTGGTGATCTCTTTCTTGGAAGTCCATTGTTAGGGGAAGATGTAAAAGCTCTGTATAAAAGGTAG 2640 0.3932 MESAVDVLTAKRLSPTGFSLDGLKRLKLSSDSPPYPAHDKIEPKTPQNSNVVEYSNPFVISDVLDRLESGKFGSVTKDIEALIARKMQILSPYFGKYPRLVSQLLKVVTNHDEGTPKWVQVTGVSDELDQKVIDLEGEHIKKDVPAAPNPVVIIDSDEEDDNDKKSILSFHEVMLPTVAAPSPALKMIGYHTPIPYRGESEDLKIQTSTDEKNKGKGVYIGVQEGEDHQVNAEDDGLDDIWKEMSMAIECSKDVSENPLPDEEVNKDEDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYASDSWNPKEKDVFGINVAEDDLMVTEISAHPRHMKQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWMEQKSILFLGYKQFSSIVCDNGTNNTSISCQEILLKVPSILILDEGHTPRNENTDMVQSLVKVQTPRKVVLSGTLYQNHVREVFNILNLVRPRFLKMETSRPIVRRIHSRIHIPGVRSFFDLVENTLQKDTDFKRKVAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNLTTRQRQKVEELKKLSRKFKICSVGSAVYLHPELKAIAEKCGENCISDNIMDDLIEKLDVRNGVKSKFFRNMLNLCESAGEKLLVFSQYLLPLKYLERFTMKWKGWSLGREIFVISGESSSEHREWSMDKFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQMKKVFVYRLVAADSPEEEDHSTCFKKELISKMWFEWNEYCGDRAFEFEAVGVKECGDLFLGSPLLGEDVKALYKR* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0967 879 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 15 879 IPR044567 GO:0080188
Apr5g0967 879 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 689 855 IPR001650 -
Apr5g0967 879 Gene3D - 611 854 IPR027417 -
Apr5g0967 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 841 IPR027417 -
Apr5g0967 879 Pfam SNF2-related domain 368 632 IPR000330 GO:0005524|GO:0140658
Apr5g0967 879 SMART ultradead3 344 554 IPR014001 -
Apr5g0967 879 Gene3D - 317 560 IPR038718 -
Apr5g0967 879 PANTHER PROTEIN CHROMATIN REMODELING 35 15 879 - -
Apr5g0967 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 558 IPR027417 -
Apr5g0967 879 CDD SF2_C_SNF 686 814 - -
Apr5g0967 879 Pfam Helicase conserved C-terminal domain 694 802 IPR001650 -
Apr5g0967 879 MobiDBLite consensus disorder prediction 29 49 - -
Apr5g0967 879 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 362 541 IPR014001 -
Apr5g0967 879 SMART helicmild6 718 803 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0967 Apr-Chr5 14207278 14214059 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr5g0967 SNF2_N 3e-20 CL0023