Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0947 ATGGCATCAAGTAATGCATTCTTTGATGATATACGGAGCAAAGCCGATGTTGATCCTCCTCAAAATGAAGAGTCGACAGATCTTGGTGAAGTAATTAATGATCCTGCACAAGCTGTCCTTAAACCTAATGGAACTGTTTCAAGCAGCGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTTAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACATGTAGGCATGAACTTGGCAATATCAGATGCCTGGCACTGGAGAAGGTGGCTGCATCTTTGGAACTTCCATGTAAATATCAAGGTTTTGGATGCATCGGTATATATCCATATTATAGCAAGCTAAAACATGAATCGCAATGTGCATATCGACCTTATAACTGTCCATATGCTGGTTCAGAATGCTCTATTATGGGTGATATACCCTACCTAGTGGCTCATCTAAAAGATGACCACAAAGTAGATATGCACAATGGTAGCACTTTTAACCATCGCTATGTCAAATCCAATCCACAAGAAGTTGAAAATGCCACGTGGATGTTAACGGTATTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTGAGGTTTATGGGTGATGATAATGAGGCAAAGAATTATAGCTACAGTTTAGAAGTAGGTGGAAATGGGAGGAAGATGATTTGGCAAGGGGTTCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACTGTTTTGATGGTCTCATTATTCAGAGGAATATGGCCCTTTTCTTCTCAGGGGGTGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATTTGGAAAGAACAGTGA 915 0.4262 MASSNAFFDDIRSKADVDPPQNEESTDLGEVINDPAQAVLKPNGTVSSSVRELLECPVCLNAMYPPIHQCLNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDCFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0947 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 4 304 - -
Apr5g0947 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Apr5g0947 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Apr5g0947 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Apr5g0947 304 CDD RING-HC_SIAHs 54 92 - -
Apr5g0947 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Apr5g0947 304 SUPERFAMILY TRAF domain-like 109 301 - -
Apr5g0947 304 MobiDBLite consensus disorder prediction 1 27 - -
Apr5g0947 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Apr5g0947 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 4 304 - -
Apr5g0947 304 SUPERFAMILY RING/U-box 48 96 - -
Apr5g0947 304 CDD Sina 170 298 - -
Apr5g0947 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 108 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0947 Apr-Chr5 13969577 13979645 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0903 2 14251353 14256737 Apr5g0947 5 13969577 13979645 PCT