Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0946 ATGGAGTCTTTAGTTCTTCAACTTCATGAAATCTCAGCTGTCAAATTTGGCAACTTTAAGCTCAAATCTGGCATCTCCTCCCCAATCTACATAGACCTACGCCTTGTTATATCTTACCCTTCCATCCTTCGGAAAATTTCTCAAACTCTTGTTTCCTCCGTCTCTTCCACATCATTTGACCTTGTCTGTGGTGTCCCTTACACTGCTCTACCCATTGCCACATGTGTCTCTGTCACTCAGAACATCCCTATGGTCATGCGCCGCAAGGAAATAAAAGATTATGGCACTTCTAAAGCCATTGAAGGTGATTTCAAGCATGGCCAAAGTTGCTTGATCATTGAGGATCTAGTTACCAGTGGCACATCAGTTTTGGAAACTGCGGCACCACTGCGTGCTGCAGGGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGATAGAGAGCAAGGTGGGAGAGAGAATTTGGAGAGTAATGGAATCAAGCTGCATGCAATTCTTAAATTGACTGAAATGGTGGGAATTTTGAGGGAAAAAGGAAAGCTAGATGAGCAGATGCTAGGGGTTGTTATGAGATTCTTAGAAGAGAATCAGAAGGTTGCTGCTTTGGCAACTAAAGCCAAGGTTAAGGCCTTATCATTTTTGGAGAGAGCTAAGTTGTCCAAGAATCCAACGGGAAAGAGATTGTTTGAGATAATGGTTGAAAAGGAGAGTAATCTGTGTTTGGCTGCTGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCTGACAAGGTTGGGCCTGAGATATGCTTGCTGAAAACTCATGTCGATATTTTGCCAGATTTTACTCCTGATTTTGGTTCTAAGCTTCGCTTGATTGCAGAAAAACATAACTTCTTAATTTTTGAGGATCGTAAATTCGCTGACATTGGTAACACAGTGACCATGCAGTATGAAGGAGGGATCTTTCATATATTGGATTGGGCTGATATAGTAAATGCTCACATTATCTCTGGTCCTGGAATTGTGGAAGGACTGAAATTGAAGGGTTTGCCTCGTGGAAGGGGTCTATTGCTGCTTGCGGAAATGAGTTCAGCTGGTAACCTTGCCAAGGGAGCTTACACCACTGCTGCAGTGAACATTGCTGAGGATCATTCTGACTTTGTTATTGGCTTCATCTCAGTCAATCCAGAATCATGGCCTGGGGCATCCATGAATCCTTCTTTCATTCATGCAACTCCTGGAGTTCAAATGGTGACAGGTGGTGATGCTTTAGGGCAGCAATATAACACTCCACATTCTGTTGTCTATGATAGGGGTAGTGACATTATCATAGTCGGCCGTGGCATCATCAAGGCAGCAAATCCGGCTGAGGCAGCTCGCGAATACCGTCTTCAAGGATGGAGTGCATACTTGGGAAGTGCCCATTTTGTTTGCAAGAGATATTTCATTTCATATCAGTTTATGAATAACATCTGGACATGA 1461 0.4312 MESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLVISYPSILRKISQTLVSSVSSTSFDLVCGVPYTALPIATCVSVTQNIPMVMRRKEIKDYGTSKAIEGDFKHGQSCLIIEDLVTSGTSVLETAAPLRAAGLKVSDAVVLIDREQGGRENLESNGIKLHAILKLTEMVGILREKGKLDEQMLGVVMRFLEENQKVAALATKAKVKALSFLERAKLSKNPTGKRLFEIMVEKESNLCLAADVGTAAELLEIADKVGPEICLLKTHVDILPDFTPDFGSKLRLIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILDWADIVNAHIISGPGIVEGLKLKGLPRGRGLLLLAEMSSAGNLAKGAYTTAAVNIAEDHSDFVIGFISVNPESWPGASMNPSFIHATPGVQMVTGGDALGQQYNTPHSVVYDRGSDIIIVGRGIIKAANPAEAAREYRLQGWSAYLGSAHFVCKRYFISYQFMNNIWT* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0946 486 SUPERFAMILY PRTase-like 3 189 IPR029057 -
Apr5g0946 486 TIGRFAM pyrE: orotate phosphoribosyltransferase 8 169 IPR004467 GO:0004588
Apr5g0946 486 SMART OMPdecase_2 237 455 IPR001754 GO:0004590|GO:0006207
Apr5g0946 486 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 236 455 IPR001754 GO:0004590|GO:0006207
Apr5g0946 486 Gene3D - 1 207 IPR029057 -
Apr5g0946 486 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 224 IPR023031 GO:0004588|GO:0006221
Apr5g0946 486 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 293 306 IPR018089 GO:0004590|GO:0006207
Apr5g0946 486 TIGRFAM pyrF: orotidine 5'-phosphate decarboxylase 238 456 IPR014732 GO:0004590|GO:0044205
Apr5g0946 486 Pfam Phosphoribosyl transferase domain 44 152 IPR000836 -
Apr5g0946 486 CDD PRTases_typeI 59 166 IPR000836 -
Apr5g0946 486 CDD OMP_decarboxylase_like 238 455 - -
Apr5g0946 486 PANTHER PHOSPHORIBOSYLTRANSFERASE, OROTIDINE 5-PHOSPHATE DECARBOXYLASE 1 465 - -
Apr5g0946 486 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 1 465 - -
Apr5g0946 486 Gene3D Aldolase class I 208 467 IPR013785 -
Apr5g0946 486 SUPERFAMILY Ribulose-phoshate binding barrel 210 464 IPR011060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0946 Apr-Chr5 13961241 13965723 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0904 2 14261334 14267155 Apr5g0946 5 13961241 13965723 PCT