Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0935 ATGGAAGTAATGGAGGATAATCCTCCCTCAAGTGTTTTAGATGGGATTGTTGTTGGCATCAAATTTGGTATGGCTACACGCCAGGAAATTTGTACAGCATCAATTAGTGACTCTTCAATTAGTCATGCTAGTCAGCTGTCAAATCCGTTCCTTGGGCTGCCCCTTGAATTTGGCAGATGTGAATCTTGTGGTACTTCTGAAGCAGGAAAATGTGAAGGTCACTTTGGATATATTGAGCTACCAGTTCCAATATATCATCCTAGTCATGTTAGTGAATTGAAACGAATGCTGAGCCTGGTTTGCTTAAACTGCTTAAAAATGAAGAAAACCAAGTTTGCAGCTTCAAGCAGTGGTTTGGCACAGAGATTATTATCTTCTTGTTGTCAGGAAGTTAATGCTGCTCAAGTGTCTATTCGGGAGTGTAAAACAAGTGATGGTGCTTGTTACCTGGCATTGAAGGTATCCAAGTCCAAGATGCATGCTGGATTTTGGAGTTTTCTCGAAAAATATGGCTATCGATATGAGGGTGATCACACTCGAGCCTTACTTCCTTGTGAGGTGATGGAAATTATCAAGAGAATTCCAATAGAGACAAAAAAAAAGCTTGCTGAAAAAGGATATTTTCCTCAAGATGGATATATTTTGAAGTTTCTTCCTGTACCACCAAATTGTTTGTCTGTGCCTGTAGTTTCTGATGGCATCAGTGTCATGTCTTCGGATCCTTCCATAACAATTCTCCGAAAATTGCTTAGAAAGGTTGAAATCATAAAAAATTCTAGGTCTGGCGAACCAAACTTTGAGTCCCATCACGTGGAAGCAAATGACTTACAGTCAGTGGTTGATCAGTATCTTCAAGTTAGGGGTACTTCTAAGGCAACACGTGATATAGAAACACGTTTTGGGGTCAATAAAGAGCTTAATGAATCATCGACAAAAGCATGGCTTGAGAAAATGCGAACTTTATTTATAAGAAAGGGTTCAGGTTTTTCTTCCCGGAATGTGATAACTGGTGATGGTTATAAGAGGATAGATGAAGTAGGAATACCAGTTGAAGTTGCCCAACGGATAACATTTGAGGAGAGAGTTAACGTGCATAACCAAAGTTATTTGCAGAAGTTAGTTGATGAAAGTTTGTGCCTTACCTACAAGGAAGGTGTGTCAACTTATTCACTCAGGGAGGGCTCAAAGGGACATATATATCTTAAGCCTGGTCAGACAGTGCATCGGAGAATTATGGATGGGGATATTGTCTTCATTAACAGACCTCCTACTACACACAAACACTCGTTACAAGCACTTAATGTCTACATCCATGATGACCACACTGTGAAAATAAATCCTCTAATTTGTGGACCCCTTGGTGCTGATTTTGATGGTGACTGTGTCCACCTGTTTTATCCACAGTCACTTGCTGCTAAAGCTGAAGTAGTGGAACTATTTTCTGTAGAGAATCAGCTGCTCAGCTCTCACAGTGGTAATTTGAACCTGCAATTAACCACAGATTCATTGTTGTCACTGAAGATTTTGGTCAAGCGATGTTTCTTTGATAGAGCAGCAGCTAATCAATTGGCGATGTTTCTTTCACTGCCTTTGCCACGGCCTGCTTTGCTCAAGACCAGTTCTGGTGATTCTTACTGGACTTCCATCCAAATGTTGCAGTGTACTTTGCCTTTGTCTTTTGATTGCACTGGGGGCCGGTACTTGATTAGGCAGAGTGAAATGTTAGAATTTGATTTCAACAGGGAAGTTCTGCCTGCAACGATAAATGAAATAGCAGCCTCAATTTTCTTTGGGAAAGGTCCAAAGGAGGCACTAAAATTTTTTGATGTAATGCAGCCCTTTTTGATGGAAAGCTTATTTGCTGACGGGTTTAGTGTTGGCCTGCAAGATTTTTCAATATCCAGGGCAGTAAAAAGAATTATAGATAGAAGCATTGGGAAGGTTTCTTCTCTGTTGTATCAGCTGAGGTCCATTTACAATGAGCTGGTGGCACAGCAACTGGAGAAGCACATTCGTGATGTTGAAATTCCTGTTGTTACTTTTGCTCTGAAGTCAACTAAGCTAGGTGATTTGATTGACTCAAAGAGTAAATCAGCTCTTGACAAGGTGGTCCAACAGATTGGGTTTTTAGGGCAGCAACTTTTTGAAAGGGGAAGGTTCTATTCCAAGGGATTGGTTGAAGACGTTGCATCCCATTTTCATGTGAAATGTTGTTATGATGGGGATGGATATCCCTCTGCTGAGTATGGGTTACTCAAAGGGTGTTTTTATCATGGTTTGGATCCATATGAAGAGATGGTGCATTCAATTTCAACAAGAGAAATAATTGTGCGCTCTTCTAGGGGATTATCTGAACCAGGAACTCTGTTTAAGAATTTGATGGCCATCCTTCGGGATGTTGTGATTTGTTATGATGGAACTGTAAGAAATGTTTGTAGTAATTCCATTATCCAATTTGAGTATGGGATACAAGCTGGTGATAAAACTGAGCACTTATTCCCTGCTGGTGAGCCTGTAGGCGTCTTAGCTGCAACTTCTATGTCAAATCCTGCTTATAAGGCTGTCCTTGATGCTACTCCTAGTAGCAATTCTTCATGGGAGTTGATGAAGGAAATATTACTCTGCAAGGTCAATTTTAGAAATGAACCGATTGATCGCCGTGTAATTTTGTATTTGAATGACTGTGATTGTGGAAGGAGTTATTGCCGTGAAAATGCTGCGTATTTAGTTAAAAATCAATTGAGAAAAGTCAGTCTCAAAGATGCAGCAGTAGAGTTCATCATTGAATACCAACCACAGCGAAGTCATGTGGCAAGTACTAAAATTGATGCAGGCCTTGTTGGTCATATATATCTGGATGAGATGATGTTAGAAGAGCTGAAGATCAATATGGATGACATTTTCCAAAAATGTCAAGAAAAACTAAATTCCTTTACTAGGAAAAAGAGTCTTAATCAAGTCCTCAAGAAGACTGAATTGTGGTTTAGTGAGTCTTGCTCATTTCTGCATGCTTCTGCACCATGTTTAAAGTTCATTTGGCTAGATGATAGTGATAATGATTTAGACAGAATTGCAAACACCATGGCTGACAAAATCTGCCCTGTTCTGTTAGAAACAATAATCCAAGGAGACCCTCGTATTAACTCTGCAAGTATAATCTGGGTTAGTCCAGACACAAACACATGGGTCCGAAACCCTTATAAATCTTCCAACGGTGAATTGGCACTAGACGTCATTCTCGAGAAAGAAGCTGTTAAACAAAGTGGTGATGCTTGGAGGATTGTACTTGATTCTTGCCTTCCTGTTCTTCATTTGATTGATACCAGGCGTTCCATCCCTTATTCTATTCAGCAAATTCAGGAATTACTAGGGATATCATGTACTTTTGATCAAGCAATTCAGCGTCTTGCAGCATCTGTGAAAATGGTGGCAAAAGGTGTTCTTAGAGAGCATCTCATTCTGTTAGCAAGTAGCATGACTTGTGGTGGGATTTTGGTTGGCTTTAATACAGGTGGATATAAAGCACTGGCTCGCCAATTGAATATTCAAGTACCATTCACAGATGCAACACTCTTTACACCTAAAAAATGTTTTGAGCGAGCTGCTGAGAAATGCCATACTGACTCTTTATCAAGCATAGTTGCTTCCTGTTCCTGGGGTAAACATGTGGCAGTTGGTACAGGATCAAATTTTGACATCCTATGGGATGCAAACGAGATAAATTCAAAGGAGATTGAAGGGATGGATGTTTACAATTTTCTTCACATGGTCAAAAGCCTTTCCAATGGGGAAGAAGAAAACATTGCTTGTTTGGGTGAAGACATTGATGATTTGCTTGAAGAAAATTTGGGCATATCTCCACAGCATACAACTGGTTTTGATGCTATCTTTGAAGAGAATATTGAACTACTGAATGATTCAACATCCAATAGTTGGGATGCAAATACAAACCAGACTGAGACAAAAACCAATGAGTGGTCAGCTTGGGGAGGTAACGAAGCTGATAAAGATGGAGGATCTGGAAAAGTCCAAGAGGATTCTTGGAGCTCTCATGGACGGAAAGCTGATTTCACCCAAGAGGACTCTTCCAGGTCCAGTGCTTGGGATTCTAAAACAACCAATCAGACCCAAACAAAATTAAATGAATGGTCAGCTTGGGGAGGTAACAAAACTGATGAAGATGGAGGATCTGGAAAAGTCCAAGAGGATTCCTCGAGCTCACAAAAGAAGAAAACTGATGTTATCCAAGAAGACCCCTCTAGGTCCAGTGCTTGGGATGTGCAAGATCAGATGAAATCTAATTCCAATGATTGGTCTTCTTGGGCTAGGAATAAAGTTGAAATAAAAGACAGTGAAAGAACCCAAAATGATTCTTGGAGCTCCCTTAAGCAAAAAGCTGATGTTACCCAAGGAGACTCTTCTAGTTCTGGCGCTTGGGATGCAAACATAACAGACCAGACCAAAACAAAATCAAATGAATGGTCTGACTGGGGAGGAAAGAAATCTAATTCACCAGATGGTGGAGCCCAAAGAGTCCAAGAGGATTCCTGGAGTTCCCGTAAGTGGAAAGCTAATGTTACCCAAGAAGACCCATCTAGGTCCAGTGCTTGGGATGTGAAAGATCAGACAAAAGCAAATTCCAGTGATTGGTCTTCTTGGGCTAGAGATAAACGTGAAATAAAAGATGGTGGGTCAGAAATAGGCCAAGAGGATTCTTGGGGCTCTGTTAAGCGGAAAGCTGAACCAAAGGTTGGAGCTGATGTTATGCAAGAAGACTCTTTTAGATCCAATGCTTGGGAGCAAAATTCTGACAATGTGAAGGTGACTCGGAGCAATGAAATTGATTTAAATTGGGATGCTAAATTGCCAGTTGGCAGTAGCTCGTGGGGTAAACCCAAGTCCCCAGAAAATCAAGCTTGGGATTCCCATAATCAGTCAAATCAAGCTGCAAGTTCACAGGGATGGGACTCCCAAATTTCTTCAGCTAATCCTGACAGTGACAAAGGTTTTCAGTGGGGAAAACAAAGAGATTCATTCAAGAAAAATCGTTTTGAAGGTTCACAAGGTTGGGGTTCAAATACTGGTGATAGGAGAAATAGGAATCGCCCGCCTAGAGCACCTGGACCAAGATTGGACATGTACTCATCTGAGGAACAGGATGTTCTGAAGGATATTGAAAACATTATGCAGTCTATCAGGCGAATCATGCAACAACAAGGGTACAATGATGGGGACCCACTGGCTGCTGAAGATCAACATTTTGTACTTGAGAATGTCTTTGAACACCACCCAGATAAAGAAACCAAAATGGGTGCAGGAATTGATCATGTCATGGTTAGCAGGCACAGCAATTTTCAGGAAAGCAGGTGCTTTTATGTGGTTTTGAAGGATGGTCGAAAAGAAGACTTTTCATACCGCAAGTGCTTGGACAACTTAATAAAGAAGAAGTATCCAGATGTTGCTGAATCATTCATTGGCAAATATTTTCGGAAACCCCGTGGAAGGGGGGACCAGACTGCAACTCCAGCAGTGGAGCAGATCACAACACCAGGGCAGGCTGAAAATACAACACCAGTGGGTGACCAGACCCCAACTCCTGGGCCTATGGAAACAAATGAGTAG 5622 0.4105 MEVMEDNPPSSVLDGIVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKRMLSLVCLNCLKMKKTKFAASSSGLAQRLLSSCCQEVNAAQVSIRECKTSDGACYLALKVSKSKMHAGFWSFLEKYGYRYEGDHTRALLPCEVMEIIKRIPIETKKKLAEKGYFPQDGYILKFLPVPPNCLSVPVVSDGISVMSSDPSITILRKLLRKVEIIKNSRSGEPNFESHHVEANDLQSVVDQYLQVRGTSKATRDIETRFGVNKELNESSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKRIDEVGIPVEVAQRITFEERVNVHNQSYLQKLVDESLCLTYKEGVSTYSLREGSKGHIYLKPGQTVHRRIMDGDIVFINRPPTTHKHSLQALNVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVENQLLSSHSGNLNLQLTTDSLLSLKILVKRCFFDRAAANQLAMFLSLPLPRPALLKTSSGDSYWTSIQMLQCTLPLSFDCTGGRYLIRQSEMLEFDFNREVLPATINEIAASIFFGKGPKEALKFFDVMQPFLMESLFADGFSVGLQDFSISRAVKRIIDRSIGKVSSLLYQLRSIYNELVAQQLEKHIRDVEIPVVTFALKSTKLGDLIDSKSKSALDKVVQQIGFLGQQLFERGRFYSKGLVEDVASHFHVKCCYDGDGYPSAEYGLLKGCFYHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQAGDKTEHLFPAGEPVGVLAATSMSNPAYKAVLDATPSSNSSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRSYCRENAAYLVKNQLRKVSLKDAAVEFIIEYQPQRSHVASTKIDAGLVGHIYLDEMMLEELKINMDDIFQKCQEKLNSFTRKKSLNQVLKKTELWFSESCSFLHASAPCLKFIWLDDSDNDLDRIANTMADKICPVLLETIIQGDPRINSASIIWVSPDTNTWVRNPYKSSNGELALDVILEKEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYSIQQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGILVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSNFDILWDANEINSKEIEGMDVYNFLHMVKSLSNGEEENIACLGEDIDDLLEENLGISPQHTTGFDAIFEENIELLNDSTSNSWDANTNQTETKTNEWSAWGGNEADKDGGSGKVQEDSWSSHGRKADFTQEDSSRSSAWDSKTTNQTQTKLNEWSAWGGNKTDEDGGSGKVQEDSSSSQKKKTDVIQEDPSRSSAWDVQDQMKSNSNDWSSWARNKVEIKDSERTQNDSWSSLKQKADVTQGDSSSSGAWDANITDQTKTKSNEWSDWGGKKSNSPDGGAQRVQEDSWSSRKWKANVTQEDPSRSSAWDVKDQTKANSSDWSSWARDKREIKDGGSEIGQEDSWGSVKRKAEPKVGADVMQEDSFRSNAWEQNSDNVKVTRSNEIDLNWDAKLPVGSSSWGKPKSPENQAWDSHNQSNQAASSQGWDSQISSANPDSDKGFQWGKQRDSFKKNRFEGSQGWGSNTGDRRNRNRPPRAPGPRLDMYSSEEQDVLKDIENIMQSIRRIMQQQGYNDGDPLAAEDQHFVLENVFEHHPDKETKMGAGIDHVMVSRHSNFQESRCFYVVLKDGRKEDFSYRKCLDNLIKKKYPDVAESFIGKYFRKPRGRGDQTATPAVEQITTPGQAENTTPVGDQTPTPGPMETNE* 1874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0935 1873 Gene3D - 1718 1815 - -
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1506 1550 - -
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1457 1499 - -
Apr5g0935 1873 Pfam RNA polymerase Rpb1, domain 3 485 630 IPR007066 GO:0003677|GO:0003899|GO:0006351
Apr5g0935 1873 SMART rpolaneu7 211 510 IPR006592 GO:0003677|GO:0003899|GO:0006351
Apr5g0935 1873 Pfam RNA polymerase Rpb1, domain 1 45 285 IPR007080 GO:0003677|GO:0003899|GO:0006351
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1395 1417 - -
Apr5g0935 1873 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 17 1238 - -
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1418 1442 - -
Apr5g0935 1873 Pfam RNA polymerase Rpb1, domain 5 759 1175 IPR007081 GO:0003677|GO:0003899|GO:0006351
Apr5g0935 1873 Pfam RNA polymerase Rpb1, domain 2 328 481 IPR000722 GO:0003677|GO:0003899|GO:0006351
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1841 1873 - -
Apr5g0935 1873 PANTHER DNA-DIRECTED RNA POLYMERASE 199 1383 IPR045867 GO:0003899|GO:0006351
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1307 1328 - -
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1307 1712 - -
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1831 1873 - -
Apr5g0935 1873 Pfam Protein of unknown function (DUF3223) 1740 1809 - -
Apr5g0935 1873 Gene3D RNA polymerase II, clamp domain 15 125 IPR044893 -
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1361 1385 - -
Apr5g0935 1873 Gene3D - 325 489 - -
Apr5g0935 1873 Gene3D RNA polymerase ii 357 409 - -
Apr5g0935 1873 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 199 1383 - -
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1594 1612 - -
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1338 1360 - -
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1630 1668 - -
Apr5g0935 1873 MobiDBLite consensus disorder prediction 1551 1588 - -
Apr5g0935 1873 Gene3D RNA polymerase Rpb1, domain 3 490 625 IPR042102 -
Apr5g0935 1873 Gene3D - 799 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0935 Apr-Chr5 13774333 13793611 Dispersed