Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0906 ATGGTGGTTAAACCGGGTGTGATTCCGGACTTCGGGGCTCTGCGAGATCTTTTCAGGCATCACATAGAGTCCTTCGATTACATGGTCGATGCTGGATTGGAAACCATGCTCAGCCACATCAAACCCATCGAAGTTTTCGACCCTTTAACATCCACAAACCTTAGAATTTGGCTGGATAATCCGGTGTTGTATCCGCCGCAGAAGGAGCGAATTTCGAGGACGATGCGAGAGGCCTTACTGCCATTTGAATGTAGACAGGCAAAGGTTTCATATGCAGGGAAGTTCACTATAGATGTTTGCTTTCAATATAATGATGGGCCAATTATTAGAGAAAATACAAATTTTGGGCAGTTTCCCATAATGCTTCAGTCAAAGTTATGCAACTTGAGAGGTGCTGATCCCCAGAAACTTGTGTCCTACAAGGAAGAAGCATCGGAAATGGGTGGTTACTTCATACTGAATGGCCTTGAGAGAGTTATTCGACTGTTAATTTTGCCAAAACGGAATTATCCAATGAGTATGGTGCGGAGTTCATTTAGTGACCGGCGGGAAGGATACACTGATAAAGCAGTTGTAATAAGGTGTGTAAGAGCTGATCAGACCTCATTATCAATAAGATTGTATTACCTTCGTAATGGGAGTGCAAGACTTGGTTTCTGGTTAAGAGGAAGGGAGTATTTACTTCCTGTGGGCATTGTTTTGAAGGCCCTCATTGACACAACTGACCGTGAAATTTATGTAAACTTGACGAGCTGCTATAATGAGAAGTATGAAAAGGGAAAGGGTGCTGTTGGGACCCAGCTTGTTGGTGAAAGGGCAAAAATAATCTTAGATGAAGTTCGAGATTTGTCTCTTTTCACTCGTCTTCAATGTCTAGAATATATTGGACAGCATTTCCAACCTGTAATGACTGAACTTAGGAATGACAGTTATCCTATTGTGGCTGATGCTGTTTTGAAGGACTGCATATTAGTTCATCTGGATAACAATTTTGACAAATTCAATCTTCTCATCTTCATGTTGCAGAAACTTTTTTCACTTATAGATCAGACCTCAGTACCAGACAACCCTGACTCCTTGCAAAATCAGGAGGTCTTACTCCCTGGTCATCTGATTACACTTTATCTGAAGGAAAAACTGGAAGATTGGCTGCAAAAGGGCAAAAAGCTTCTCCTGGACGAGATCAATAAGCAAAGCAAGAAGTTTGATTTCAGCGACCTTCTTCAAGTTAAGAAAGTTATGGATAAAAATGCTGCAAAGCAAATTAGTACTGCAGTTGAAAATATGTTGAAAACTGGAAGACTGGTCACACAAACTGGTCTAGATCTGCAGCAGAGGGCAGGCTATACAGTCCAAGCTGAAAGGCTTAACTTTCTACGTTTTCTTTCACATTTTCGTGCTGTTCATCGAGGGGCCTCATTTGCTGGACTTCGTACCACAACTGTTCGGAAGCTGTTGCCTGAATCTTGGGGTTTTCTTTGCCCCGTGCACACACCTGATGGGGAGCCATGTGGATTGTTGAATCATATGACTTGCACAAGTAGGATTACATCATTCTTTGATTCTCAAGGAAACATTAAAGATTATTTTAAAATAAAAATGTCAGTCCTAAATATTTTAATTGAGGTTGGGATGACACCATCATTGCCAAAGATATTTCTTCCTGGTCCTCCTGAAGCTCTTACTGTTATATTAGATGGTTGTGTTGTTGGTTGTATATCTACCAGTGAAGTTGAGAAAGTTGTGGCTCACATACGAGAATTAAAAGTGTCATCTGCTGCAGTGGTTCCTGATGATATGGAAGTGGGATATGTTCCTTTGAGCATGGGTGGAGCATATCCTGGTCTCTACTTGTTCACATCCCCATCAAGATTTGTTCGGCCAGTGAAAAATATATCAATTCCTTTAAATGGAAATGATAACATTGAACTCATTGGTCCATTTGAACAGGTTTTTATGGAAATAAGTTGTCCTGATGGTGGAGATGGTGGTAGAAAAAGTGCATTTCCTGCAACTCATGAAGAAATTCATCCAACAGGAATGCTCAGTGTAGTTGCTAATCTCACACCATGGTCAGATCATAATCAAAGTCCACGAAATATGTACCAGTGTCAGATGGCAAAGCAAACAATGGCATTCTCTTCACAAACTATTCAACATCGTGCAGATCAAAAGTTATATCATCTCCAGACTCCGCAGACTCCCATTGTACGCACAAGTTCATATACCAAGTACAACATTGATGAATTTCCAACAGGCACAAATGCTATAGTTGCAGTTCTGGCATATACAGGATATGATATGGAGGATGCCATGATTCTAAACAAGTCATCAGTAGAACGAGGAATGTTTCATGGACAAATATATCAAACAGAAACCATTGACTTGACTGAACAAGGCAGCAGATCAGACCGATCTTTAAGAATGTTCAAAAAAAGTAATGTAGAGAAATCAGCTTGTCCCTCGCTTGATTCAGATGGACTTCCGTATGTTGGTCAGATGATACGACCAGATGAACCCTATTGTAGCATTTATAATGAAGTAACAAGTTCCACACGTACCTTTAAAAAAAAGGTTTCTGAACCGGTTTATGTTGACTATGTTGCTGTTGATGTCAAAAACAAGAAGCACCTTCAGAAGGTCAACATACGCTTTCGACATCCTCGGAACCCTGTCATTGGTGATAAATTTAGCAGTAGACATGGGCAGAAAGGTGTTTGCTCTCAGTTGTGGCCAGATGTTGATATGCCATTTTCTGGTAACACTGGGATGCGACCAGATCTCATTATCAATCCTCATGCATTTCCTTCCAGGATGACAATTGCTATGCTTTTGGAATCTGTTGCTGCTAAGGGAGGTAGCTTACGTGGAGAATTTGTGAATGCAACTCCATTCCGAAATTCAGTGAATAAAGACAATGGGGAGTTTGATTCAAAATCAAGTTCCCTTGTTGATGATCTTGGTCATATGCTAAGAGCAAAGGGATTTAATTACCATGGTTTGGAGGTTCTGTACAGTGGATTTTATGGAACAGAACTACCATGTGAGATATTTGTTGGACCTGTTTATTATCAGCGTCTACGTCACATGGTCTCTGATAAATTTCAGGTTCGATCTACTGGCACAATTGACCAGGTCACCCGGCAGCCAATAAAAGGGAGAAAGCGTGGTGGGGGAATTCGATTTGGAGAAATGGAACGTGACTCTCTACTTGCACATGGAGCTGCATATCTTCTACATGATAGGTTGCACACCTGTTCTGATTATCACATTGCTGATGTGTGTTCCGTTTGTGGAAGCATGCTTACCACAACATTCATCCAGCCTCAAAAGCGGCCAGTGCGGGAGATTGGTGGGCTACCCCCTGGAAGAGCTCCAAAAAAGGTCGCCTGTCATGCTTGCCAAACGAGTAAAGGCATGGAGACAGTCGCCATGCCTTATGTATTTAGATATTTGGCGGCAGAGTTAGCAGCGATGAACATAAAAATGACTCTTAAGCTCAATGATGGAGCTGGAGCCTGA 3522 0.4148 MVVKPGVIPDFGALRDLFRHHIESFDYMVDAGLETMLSHIKPIEVFDPLTSTNLRIWLDNPVLYPPQKERISRTMREALLPFECRQAKVSYAGKFTIDVCFQYNDGPIIRENTNFGQFPIMLQSKLCNLRGADPQKLVSYKEEASEMGGYFILNGLERVIRLLILPKRNYPMSMVRSSFSDRREGYTDKAVVIRCVRADQTSLSIRLYYLRNGSARLGFWLRGREYLLPVGIVLKALIDTTDREIYVNLTSCYNEKYEKGKGAVGTQLVGERAKIILDEVRDLSLFTRLQCLEYIGQHFQPVMTELRNDSYPIVADAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNQEVLLPGHLITLYLKEKLEDWLQKGKKLLLDEINKQSKKFDFSDLLQVKKVMDKNAAKQISTAVENMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNIKDYFKIKMSVLNILIEVGMTPSLPKIFLPGPPEALTVILDGCVVGCISTSEVEKVVAHIRELKVSSAAVVPDDMEVGYVPLSMGGAYPGLYLFTSPSRFVRPVKNISIPLNGNDNIELIGPFEQVFMEISCPDGGDGGRKSAFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSSYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLTEQGSRSDRSLRMFKKSNVEKSACPSLDSDGLPYVGQMIRPDEPYCSIYNEVTSSTRTFKKKVSEPVYVDYVAVDVKNKKHLQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVNATPFRNSVNKDNGEFDSKSSSLVDDLGHMLRAKGFNYHGLEVLYSGFYGTELPCEIFVGPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSVCGSMLTTTFIQPQKRPVREIGGLPPGRAPKKVACHACQTSKGMETVAMPYVFRYLAAELAAMNIKMTLKLNDGAGA* 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0906 1173 Pfam RNA polymerase Rpb2, domain 7 1058 1166 IPR007641 GO:0003677|GO:0003899|GO:0006351
Apr5g0906 1173 Gene3D RNA polymerase alpha subunit dimerisation domain 1043 1169 - -
Apr5g0906 1173 CDD RNA_pol_B_RPB2 17 1166 IPR015712 GO:0003899|GO:0006351|GO:0032549
Apr5g0906 1173 Gene3D - 9 169 - -
Apr5g0906 1173 Gene3D - 352 545 - -
Apr5g0906 1173 Pfam RNA polymerase Rpb2, domain 3 453 516 IPR007645 GO:0003677|GO:0003899|GO:0006351
Apr5g0906 1173 ProSitePatterns RNA polymerases beta chain signature. 894 906 IPR007121 GO:0003677|GO:0003899|GO:0006351
Apr5g0906 1173 Gene3D RNA polymerase Rpb2, domain 2 170 351 IPR037034 GO:0003677|GO:0003899|GO:0006351
Apr5g0906 1173 Pfam RNA polymerase I, Rpa2 specific domain 570 627 IPR009674 GO:0003899|GO:0005634|GO:0006351
Apr5g0906 1173 Gene3D - 686 1041 IPR037033 GO:0003677|GO:0003899|GO:0006351
Apr5g0906 1173 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2 13 1165 - -
Apr5g0906 1173 Pfam RNA polymerase beta subunit 17 413 IPR007644 GO:0003677|GO:0003899|GO:0006351
Apr5g0906 1173 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 5 1169 - -
Apr5g0906 1173 Pfam RNA polymerase Rpb2, domain 2 187 365 IPR007642 GO:0003677|GO:0003899|GO:0006351
Apr5g0906 1173 Pfam RNA polymerase Rpb2, domain 6 685 1056 IPR007120 GO:0003677|GO:0003899|GO:0006351
Apr5g0906 1173 Gene3D - 716 890 IPR014724 GO:0003899
Apr5g0906 1173 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 13 1165 IPR015712 GO:0003899|GO:0006351|GO:0032549
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0906 Apr-Chr5 13355231 13372392 Dispersed