Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0904 ATGAGTCCTCCTGCTGAATTGAAGATGGAAGATGGCAAGCCTTCAGTTACCTCGCCTGATAATGGCGACCAAGTCGAGTCTCGCTTCCTTGAGTTTTGCAAGAATGGGCTGGCATTGGAAGAGAGAAGCTGTAAAGAGGCAATGAATATGTTTGGAGAAACCAAACATATTCTACTGACAAATTTTTCGTCGATGGGGAATGGAACGTCTGAAGAAGCAGAGCGGTATTGGTTTGCTTTTATTTTATACTCTGTCAAGAAATTGATTCAGAACAATGTGGAGAGTGGGAAGGAAGAGACTGAGAACACTGGGCTTACCTTGTGTCGTATATTGAGAGCAGCTAAGCTAAACATTGCAGATTTTTTTAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAATTTTAAGCAATATATATGGTTCAGATTGGGAAAACAGGCTTGAGGCAAAGGAGATGCATGCCAATGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAATTCTTCGTGGCAACTGATGCAAATGTTGAAAAGAACTCATCTGTTACTGTTCAGGCATCTGAATACCATCGATTTGGATGGCTACTTTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACCAATGGTTTGATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTGCTCGTTTTCGGAATTTCAACATTCATGACTCCTCACGCTTTGTTAAGAAAAGTAACAAAGGTGTGGACCTCCTTGCATCACTTTGCAACATATATAACACTTCTGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGAAGCCCTGTTTAGCATGTGATTGCGAGAATGAAAACCTAGAGAATATCGATAAAGATGGTTTGACCTGTTTTAAAGATCTGATGGAGGAATCATCTCTACCTTCAAGTTTAAATATCTTAGAAAAAGATTATGATTACATGATTCGCAACAAGAGTGAATTGGATGAGAGATTATTTATTAATGAGGATGACAGCCTATTAGCTTCAGGAAGCTTGTCTGGAAGTTCTATTTCAGCAGGTGGTGTAAAGAGGAAAATTGATTCAATGGCATCACCTGCTAAGACTATTACAAGTCCACTCTCACCTCATCGCTCCCCTGCATCCCATGCTAATGGGATTCCAGGTAGTGCAAACACAAAGATGACAGCCACCCCTGTAAGCACGGCAATGACTACTGCAAAGTGGCTTCGCACTGTCATTTCTCCACTTGCATTGAAGCCCTCTCCAGAGCTGGAACGGTTTTTGATATCATGTGACAGGGATGTTACAAGTGATGTGGTGCGCAGAGCACAGATTATATTGCTGGCTATATTTCCTAGTAGTCCCCTTGGAGAACGATGTGTAACCGGAAGCCTGCAAAGTGCAAACCTCATGGACAATATATGGGCGGAACAACGAAGATTGGAAGCATCAAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAGTACTTCATGCAACTAATTTAACCTCTCTACTAACTAATGAGAGGTTCCATCGATGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCAACTCACAAGACCGTAACAATGTTGTTCCCTGCTGTATTGGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATCGAAAGCTTCATTAGGCATGAAGAATCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCGCTGGAAGAGCGGCTTTTGGAAAGCATGGTATGGGAAAAGGGTTCTTCGATGTATAATTCTTTAGCAGTTGCTAGACCTGCCCTTTCTGCAGAGATAAATCGTCTTGGACTGCTAGCTGAACCAATGCCATCATTGGATGAAATCGCAATGCATATTAACTTCTCTTGTGGAGGGCTTCCACCTGTACCATCCGTGCCTAAGCTTGAGACTTCACCAACTCAGAATGGGGATACCAGATCACCAAAGCGGCTTCGTACAGAATTTCGAAATGTGTTAATGGAACAAAATTCTTTTACTTCACCGGTGAAAGATCGGTTGCTTCCCTTCAGCAACCTCAAGTCAAAGCTACCCCCACCTCCTCTGCAGTCAGCATTTGCCAGTCCAACAAAACCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATCGTTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGACTACAATTATCTCAGCAGATAAGGGAGAATGTGTACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTCTCTTTTTCAACCGCCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAACTTAACCTAACTTTTAGGGAGATCATATACAACTACAGAAAGCAACCACAATGCAAACCCCAGGTTTTCCGTAGTGTATTTGTTGATTGGTCATTGTTACGCCGAAATGGGAGAACAGGACAGGAGCATGTTGACATCATTACATTTTACAACGAAATATTCATTCCCTCTGTAAAGCCGCTGCTGGTTGAACTTGGCCCTGGTGGAGCAACTACAAAAGGCGACCGAATACCTGAAGTTAATAAAAATGATGGTCAATGTCCAGGATCTCCTAAAATATCACCTTTCCCAACCCTTCCTGATATGTCTCCAAAAAAAGTGTCCGCCACTCACAATGTATATGTCTCTCCATTACGATCCTCTAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTACTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTAACCGCCATCAATAACCGATTGAATGGCAACCGGAAGGTCAGAGGTCCCCTCAATTTTGATGATGTTGATGTGGGCTTGGTTAGTGACTCTATGGTTGCAAACAGCCTCTATCTCCAAAATGGAAGTTGTGCATCATCATCAGGTGCACCATTGAAGTCTGAGCAACCTGACTCTTAA 3060 0.4225 MSPPAELKMEDGKPSVTSPDNGDQVESRFLEFCKNGLALEERSCKEAMNMFGETKHILLTNFSSMGNGTSEEAERYWFAFILYSVKKLIQNNVESGKEETENTGLTLCRILRAAKLNIADFFKELPQFVVKAGPILSNIYGSDWENRLEAKEMHANAIHLKILSKYYKRVFGEFFVATDANVEKNSSVTVQASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNIHDSSRFVKKSNKGVDLLASLCNIYNTSEDELRKTMEKANNVIADILKKKPCLACDCENENLENIDKDGLTCFKDLMEESSLPSSLNILEKDYDYMIRNKSELDERLFINEDDSLLASGSLSGSSISAGGVKRKIDSMASPAKTITSPLSPHRSPASHANGIPGSANTKMTATPVSTAMTTAKWLRTVISPLALKPSPELERFLISCDRDVTSDVVRRAQIILLAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEASKLYYRVLEAMCRAEAQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPSVPKLETSPTQNGDTRSPKRLRTEFRNVLMEQNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIVKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSLLRRNGRTGQEHVDIITFYNEIFIPSVKPLLVELGPGGATTKGDRIPEVNKNDGQCPGSPKISPFPTLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPLKSEQPDS* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0904 1019 Gene3D - 419 607 - -
Apr5g0904 1019 Gene3D - 195 353 - -
Apr5g0904 1019 SMART DUF3452_2 88 234 IPR024599 -
Apr5g0904 1019 Pfam Retinoblastoma-associated protein B domain 741 868 IPR002719 GO:0005634|GO:0051726
Apr5g0904 1019 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 9 1006 IPR028309 GO:0006357|GO:0051726
Apr5g0904 1019 SUPERFAMILY Cyclin-like 424 619 IPR036915 -
Apr5g0904 1019 MobiDBLite consensus disorder prediction 1 23 - -
Apr5g0904 1019 Coils Coil 272 292 - -
Apr5g0904 1019 SMART RB_A_2 416 617 IPR002720 GO:0005634|GO:0051726
Apr5g0904 1019 Pfam Retinoblastoma-associated protein A domain 416 617 IPR002720 GO:0005634|GO:0051726
Apr5g0904 1019 Gene3D - 689 908 - -
Apr5g0904 1019 PANTHER BNACNNG22930D PROTEIN 9 1006 - -
Apr5g0904 1019 MobiDBLite consensus disorder prediction 882 908 - -
Apr5g0904 1019 MobiDBLite consensus disorder prediction 388 412 - -
Apr5g0904 1019 SUPERFAMILY Cyclin-like 739 906 IPR036915 -
Apr5g0904 1019 Pfam Domain of unknown function (DUF3452) 99 234 IPR024599 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Apr5g0904 RB_A 1.4e-63 CL0065