Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0886 ATGAGAAAGAAGCTGGATACCCGTTTCCCTGCAGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAAATAGCTCTGGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAACTATTTCTGCAAGATCTCTGTGACCGTACTTATGAAATAACTCTTCAAAGAGGAGCGAAGACCATGAATTCATTGCATTTAAAGCATTGTGTACAGAGCTACAGTGTCTTTGACTTTCTGAGGGATGTTGTCAGCAGGGTTCCTGACTATGGCCATGGCCATGGCCATGCTGAGGGTGGTGCTGATGATCGGCCCATTTCAAAAAGAAGGAAAGCTGTAGGTGATGATTGTAATGACAGTGATGAAGAGGCTAAGAGGAGCAAGATGCATGAGTTGAACCACACTGGCAGTACTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGTCGAGGGTCTCGAAATGTCATAAGAGAGGCATGTCATCAGGATGCTGAAGCCGAGCCTTGCACTTCTGTTCAGCAAGGCAGCCAACTTAATACAAACACAAGTGTGGCAATACATAATGGTCCAGAGTTGAAGGAGAACGTTGCAGTTTCTGTTGTAAGCACCGAGCCACTCCGGAATATTGATCTGAATACCAATACGAACGAAAACGATGACAAAAAGGCTAGCACACCAGCTAATGCGCCATTGCCTGAACCTCCAACAGAGGGCAAACACGAAGAAATTCCAGGTTGGTCCCTTTCTGATGTGGACAAGGTGGCCATTGATTCAATGCAGCTTGCACAGATTGGTAGGCAACTAGAAGAGGACGAGGAAGATTATGATGAAGAGGAAGGGTAA 849 0.4629 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDVVSRVPDYGHGHGHAEGGADDRPISKRRKAVGDDCNDSDEEAKRSKMHELNHTGSTGRGRGRGRGRGRGRGSRNVIREACHQDAEAEPCTSVQQGSQLNTNTSVAIHNGPELKENVAVSVVSTEPLRNIDLNTNTNENDDKKASTPANAPLPEPPTEGKHEEIPGWSLSDVDKVAIDSMQLAQIGRQLEEDEEDYDEEEG* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0886 282 PANTHER HISTONE SUPERFAMILY PROTEIN 1 280 - -
Apr5g0886 282 MobiDBLite consensus disorder prediction 91 137 - -
Apr5g0886 282 MobiDBLite consensus disorder prediction 209 225 - -
Apr5g0886 282 SUPERFAMILY Histone-fold 4 98 IPR009072 GO:0046982
Apr5g0886 282 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Apr5g0886 282 MobiDBLite consensus disorder prediction 209 249 - -
Apr5g0886 282 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 280 - -
Apr5g0886 282 MobiDBLite consensus disorder prediction 91 155 - -
Apr5g0886 282 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0886 Apr-Chr5 13005815 13011394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0886 1 270 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.123 2.97e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Apr5g0886 CBFD_NFYB_HMF 2.1e-19 CL0012