Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0882 ATGACCCCTCTCAGCATCCTTGGCTTCTTGCTCCTTTTCTCCACAGCAAGTGCACAATCCCCAATTTATGAGTACAGTTTTTGCTACAACACCACCAATAACACTTCATACCAAGACAATGTTAGAAAAGCCCTCTCATGGGTGGCTTCTGATTCAGGCATAAGCAAGGGATATAACCAAACAGTCATAGGCAGCAACAACAGTTCTAGTGATGATACTGTTTATGGGTTCTACAGCTGTAGGAGTGACATCGTCGGGTATTTCTGTCAATTCTGTCTCAACTCTGCTGCTAAAGAAATTAATCAGCGGTGTGCCAACAACACTGTAACCGCTATTATATGGTATGACTTATGCATCATCCGTTTTTCTAACCAAAGTTTCTTTGGTAAACTTACTTTAACCCCAACGTGGAACACTACTGGGAGCAAAGACATTAAGGACCCAACAGAAACTACAAGAGCCAAGGATGCCATGGAGAGCTTGATTACAAAAACTATAGAGACCAACCAGACTTGGACAGCGGGTGAGTTTGATTGGGGTGGTGACAATGAGAAAAGGTATGGTATGGTGCAGTGTTCCAGAGACCTCACAAGTGCTTATTGCAGAGAGTGTTTGCAGTTCTGCTTAGACATTTATCCACAATGTTGCGGGACAAAGGTGGGTTGGGGTGTCGTTGGTCCTAGTTGTGGGATGAAGTTTGATGAATATGAGTTCTACCAGGGTACTAATGATACAGGATCCCCTCCTCCTTTGCCAAATCAAGCCGAAGAAGGTAGTAACACGTCAAGAAAATTGATCATTGGCTTAAGTGTTCTGGGGTTTGTAGCTCTACTATGTTTCAGCTTCTACTGCTTCTGGTACAGAAAAAAAGTTAGAAAAGATGAGCTGATACCTGATACCATTCCTCTATCTTCATATCACGATGTTCAAACTGAGGAAACACTTAATGCAGACCTGCCAATAATCCCATTGACCACAATTCTACAGAGTACTAATAACTATTCAGAAGCATGTAAATTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGAACTCTACCAGATGGAAGACAAATTGCAGTCAAAAGGCTATCAAAAGCTTCTGGTCAGGGCTCAGAGGAGTTCAAGAATGAAGTAATGTTCATAGCTAAATTACAACATCGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGAGGAACATGAAAAGATACTTGTATATGAGTATTTGTCCAATGCAAGCCTCGACTCTCATCTATTTGATTATGAAAAGAAAAAGCAACTTGATTGGAAACTAAGATTAAACATTATCCATGGAATAGCAAGAGGTATTTTATACCTTCATGAGGACTCTCGACTCAAAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGATCACGAGATGAATCCCAAAATATCAGATTTTGGGTTGGCAAGGGCATTTGAAAGGGACCAGAACCAAGCAAACACAAAACGAATAATGGGCACTTATGGATACATGGCTCCAGAGTATGCAATGGAAGGATTATTTTCAGTGAAAACTGATGTTTTCAGTTTTGGAGTTCTTGTTCTAGAAATCATCAGTGGAAAAAAAAATAGTGGATTCTATCTATCAGAACATGGTCAAAGTCTTCTTTTATATGCTTGGAACATATGGTGTGCAGGAAATTGTTTGGAATTGATGGATTCAGTGCTGGAAAAATCCTGCATAGCTAGTGAAGTTGTGAAGTGCATGCACATTGGTTTGTTGTGTGTTCAACAAGATGCAGCAGATAGACCAACCATGTCCACTGTTGTTGTAATGCTTGCAAGTGACACAATGGCCCTTCCAAAACCCAATCACCCTGCATTTTCAGTGGGAAGAATGACCCCAAAGGAAGCATCTACTTCAAAAAGTTCCAAGAATCTTTCCATTAATGATGTAACAGTCTCTACAATTTTACCAAGGTAG 1959 0.4043 MTPLSILGFLLLFSTASAQSPIYEYSFCYNTTNNTSYQDNVRKALSWVASDSGISKGYNQTVIGSNNSSSDDTVYGFYSCRSDIVGYFCQFCLNSAAKEINQRCANNTVTAIIWYDLCIIRFSNQSFFGKLTLTPTWNTTGSKDIKDPTETTRAKDAMESLITKTIETNQTWTAGEFDWGGDNEKRYGMVQCSRDLTSAYCRECLQFCLDIYPQCCGTKVGWGVVGPSCGMKFDEYEFYQGTNDTGSPPPLPNQAEEGSNTSRKLIIGLSVLGFVALLCFSFYCFWYRKKVRKDELIPDTIPLSSYHDVQTEETLNADLPIIPLTTILQSTNNYSEACKLGEGGFGPVYKGTLPDGRQIAVKRLSKASGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEEHEKILVYEYLSNASLDSHLFDYEKKKQLDWKLRLNIIHGIARGILYLHEDSRLKVIHRDLKASNVLLDHEMNPKISDFGLARAFERDQNQANTKRIMGTYGYMAPEYAMEGLFSVKTDVFSFGVLVLEIISGKKNSGFYLSEHGQSLLLYAWNIWCAGNCLELMDSVLEKSCIASEVVKCMHIGLLCVQQDAADRPTMSTVVVMLASDTMALPKPNHPAFSVGRMTPKEASTSKSSKNLSINDVTVSTILPR* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0882 652 Pfam Protein tyrosine and serine/threonine kinase 339 604 IPR001245 GO:0004672|GO:0006468
Apr5g0882 652 SMART serkin_6 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0882 652 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 12 650 - -
Apr5g0882 652 Gene3D Phosphorylase Kinase; domain 1 302 409 - -
Apr5g0882 652 SUPERFAMILY Protein kinase-like (PK-like) 320 628 IPR011009 -
Apr5g0882 652 Gene3D - 22 127 IPR038408 -
Apr5g0882 652 Gene3D - 135 238 IPR038408 -
Apr5g0882 652 ProSiteProfiles Gnk2-homologous domain profile. 132 238 IPR002902 -
Apr5g0882 652 Pfam Salt stress response/antifungal 154 235 IPR002902 -
Apr5g0882 652 Pfam Salt stress response/antifungal 30 125 IPR002902 -
Apr5g0882 652 Gene3D Transferase(Phosphotransferase) domain 1 410 614 - -
Apr5g0882 652 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 650 - -
Apr5g0882 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Apr5g0882 652 ProSiteProfiles Protein kinase domain profile. 334 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0882 652 Pfam Domain of unknown function (DUF3403) 607 652 IPR021820 GO:0004674
Apr5g0882 652 ProSiteProfiles Gnk2-homologous domain profile. 19 127 IPR002902 -
Apr5g0882 652 CDD STKc_IRAK 340 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0882 Apr-Chr5 12971116 12976773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0882 9 652 Receptor kinase-like Gene Family AT4G05200 41.456 4.13e-176 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr5g0882 PK_Tyr_Ser-Thr 5.7e-49 CL0016