Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0880 ATGTTTGGGCAGAAACTATATAAGATGAGAAAGATGAATAACGAGGTTGAAGATGAGGTGCTTCCCAATGATCAGAGTGGGTCACAGTTGAATGATGAGGGTTATGATGGAAGTGCTGGTGTTGTTCTGAAGAAAGGGCCATGGACATCTGCTGAAGATGATATTTTGGTCGATTATGTCAATAAGCATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCACACAGGGCTGTTACGCTGTGGAAAAAGTTGTCGGCTGCGGTGGGCTAACCACTTAAGGCCAAATTTAAAGAAAGGGGCATTTACTTCAGAAGAGGAGCGGTTGATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGTACAGATAACGAGATAAAGAACTACTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCAGATGTGTGTTTGCAAGATTTGCAGGAGAGTCAGCGTGGCCAAAGCACTGGTGGACTTAATGGTGGCAATAAAATGCATCCCGATTTCTTGCAGAAAAACAGTTTTGAGATACATGATGCTATATTTGACAGCCTGAAGGATAATCATGGAATTTTACCTTATGTGCCTGAGCTTCCTGATATCTCTGCTTATGGGAATATGCTAAAAGGTCTTGATTCTTCTCAGTATTGTAGTTTTGTGCCACCAACATCTCCTAAGCATAAGCGCCTTAGAGAGTCAACAATGCCATTTATTGATTCCAGTGATATGAACAGAAATGGTTTATATCCATTTGATCAAATTCAGGATAATAATTCTGATGAGATTGCACAATCATTTGGAATGCAAGCACCCCTTGATCATGGTCCCTCCTCGCACAGCTCAATTTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTTTGAGGCGGCGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTGATTTAGGTAGCTGGGGTACATCTCCCCCACCTCCTTTGCTCGAGTCAGTTGATGATTTCATTCAGTCTCCTACACCAATTAGTACGCTGGATTCAGATTGTTCTCTGCAAAATAGTGGTCTGCTGGATGCTTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAAGAACCATTATTCTGACAAGAGTTCAAATTCATCTACTGCAACTCTTGTTGACAGACCAGACAGCTCTGCTTTGAATGTGTACGAGACAGAATGGGAAGACTATGCTGACCCTGTATCCCCTTTTGGTGCAACTTCAATATTGAACGAGTGCCCTGCTCTTGGTGCCAATGTGAATTCATTGGATGAACAGCCCATTCAGGCCTTTAATGGCAACATTGTGAAATTAGAGTCTGTTGACCAGATTTGGACTCCTAACAGTGAAAATCAAGCCGTGTCCCTGTTGAATATTACTCGTCCAGACTTCTTGCTTGCTTCAGATTGGCATGACCTGGGTTCTGGAGACGGCAAGAACCAAGCCATCACAGCTGATGCTTCAACGACCCTTCTTGGAGATGACTATAAGCATATGACTGCTGGAAATTCTAAGTCAAGTCAGGCGTGGGGGTTTGGTTCTTGTGCAACTGCAATTAACAATATGCCTGCTGTCTGTCAGGTGTCTGATCTTGGTTAA 1671 0.4393 MFGQKLYKMRKMNNEVEDEVLPNDQSGSQLNDEGYDGSAGVVLKKGPWTSAEDDILVDYVNKHGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTSEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPDVCLQDLQESQRGQSTGGLNGGNKMHPDFLQKNSFEIHDAIFDSLKDNHGILPYVPELPDISAYGNMLKGLDSSQYCSFVPPTSPKHKRLRESTMPFIDSSDMNRNGLYPFDQIQDNNSDEIAQSFGMQAPLDHGPSSHSSICYSHSLSNGNSSTSKPTFEAAKLELPSLQYPELDLGSWGTSPPPPLLESVDDFIQSPTPISTLDSDCSLQNSGLLDALLYQAKTLSSSKNHYSDKSSNSSTATLVDRPDSSALNVYETEWEDYADPVSPFGATSILNECPALGANVNSLDEQPIQAFNGNIVKLESVDQIWTPNSENQAVSLLNITRPDFLLASDWHDLGSGDGKNQAITADASTTLLGDDYKHMTAGNSKSSQAWGFGSCATAINNMPAVCQVSDLG* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0880 556 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 9 552 - -
Apr5g0880 556 SMART sant 44 94 IPR001005 -
Apr5g0880 556 SMART sant 97 145 IPR001005 -
Apr5g0880 556 CDD SANT 47 92 IPR001005 -
Apr5g0880 556 CDD SANT 100 141 IPR001005 -
Apr5g0880 556 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Apr5g0880 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 92 IPR017930 -
Apr5g0880 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 147 IPR017930 -
Apr5g0880 556 Pfam Myb-like DNA-binding domain 45 92 IPR001005 -
Apr5g0880 556 Pfam Myb-like DNA-binding domain 98 141 IPR001005 -
Apr5g0880 556 ProSiteProfiles Myb-like domain profile. 43 92 IPR001005 -
Apr5g0880 556 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 9 552 - -
Apr5g0880 556 SUPERFAMILY Homeodomain-like 44 139 IPR009057 -
Apr5g0880 556 Gene3D - 44 97 - -
Apr5g0880 556 Gene3D - 100 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0880 Apr-Chr5 12911487 12915971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0880 40 555 MYB Transcription Factor Family AT5G06100 43.985 1.05e-126 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr5g0880 Myb_DNA-binding 1.6e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0940 2 15307124 15318545 Apr5g0880 5 12911487 12915971 PCT