Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0878 ATGGAAGAAGGGTTGTGCCAAAACTCTGTTCCTGCTTCAGGTTCTGTTGATAAATCTAGGATTGTAGAAGTTAAACCCCTACGTAGTTTGGCACCAGTTTTACCAAAATCTCTTGAATCTTCTCTATCTGGCAAGTACTCATCTGGGTTTCCTCCATTTGTTTTATTTGAGGAACCTAGGGAACCTACACCTCAACCATCACCTGTTCCCATACCGGCTCCAATAAGGTCTTATAGGAACCCACTAGATGAAGAAGAAACCCCTCAAGGAGCCAACGGAGATAAATCTTCATCCATGGGGGGTTTGAATGATAACTGTGTTGCTGATAGTGGAAAGAGTTTGAACACCGGCAAATTATCCCAAAAGAGGAGTAAGAAAACTCAGGCGTCGCATACTAATTCAGTTTCTTTTGTTGGTGGTATTAGCCTGGCCCAAAGAGATGATGGTGATCGCGAAGGGGTTAATCTTGTGCTCATGACGTTTGACTCTCTTCGTCGAAGGCTCTGCCAACTTGAAGATGCCAAGAAGTTGAACACCATGATGGCAATCAAGCGTGCAGATTTAAGAGCAAGCAATGCATTGACGGCCAAAGGGTTTCGAACTAATGCGAAGAAGAGAGTAGGAGCAGTGCCTGGGGTTGAGATCGGGGACATTTTCTTTTTGCGAATAGAAATGTGTCTTGTAGGCTTACATGGCCAGTCAATGGGTGGAATTGACTACATGACTATCAAAGATGAGCTGCAGGGGGAACCAGTGGCTGTAAGCATTGTTTCATCTGGAGTATATGATGATGATGCAGAGGATAGTGATGTTTTAATTTATAGTGGTCAGGGTGAGAACTTCAACAAGAAAGACAAGCATGTGACTGATCAGAAGCTTCAAAGGGGCAATCTTGCTTTAGACAAAAGTTCGCGACGACACAATGAAGTTAGAGTCATCCGAGGGTTGAGAGATGCTATGAACAGAAGTGCAAAAATCTATGTATATGATGGTCTTTATAAAATCCAAGATTCTTGGATAGAAAAAGTGAAATCTGGTGGTGGTGTATTTAAGTATAAGTTTGTTAGATTGCCTGGACAACCTAGTGCTTTTTCTGTTTGGAAATCGGTTCAGAAGTGGAAGACAGACTCCACTTCAAGGCCTGGCCTTATTCTTACAGACCTCTCTAAAGGAGCTGAGAGTTTTCCTGTATCACTTGTCAATGAAGTTGATAATGAGGATGGCCCTTCCTGTTTTACTTATTTCCAATCTCTTAAGCACCCAAAACCATTCAGTTCAATGCAGCCTTCATATGGATGCAACTGTAACAAGATGTGCGTTCCTGGTGATTTGAACTGTGTTTGCATTCAAAGAAATGAAGGTGACTTTCCATATACTGTAAATGGCGTTCTAGTGAGTCGAAAGCCATTGGTTCATGAGTGTGGCCCAATGTGTAAGTGTTTTCCTAACTGCAAGAATCGAGTATCCCAGACTGGTTTGAAGCACCAAATGGAAGTGTTCAAAACTAAAGATAGAGGGTGGGGACTTCGATCACTGGATCCTATACGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTATTGACAGAGACGAGGTAAATCAGAATAGGGGAGATAATGATGAGTATGTTTTTTATACAAGCCATATTTATGAACCATTCAAATGGAATTATGAACCTAGCTTATTGGAAGAAATAAGCTCAAATGTCTCTAGTGAGGATTATGCTATATCGTCTCCTCTAATTGTCAATGCCAAGAATGTTGGAAATGTGGCTAGATACATGAATCATAGTTGCTCACCAAATATTTTCTGGCAGCCAGTCTTATATGCAGAAAACAGTCAATCCTTTCTTCACGTTGCATTTTTTGCCCTTAGACACATTCCTCCAATGACAGAGCTAACATATGATTACGGATGTTCGGGTCATGCTGAGAGAAGCAGTGCACCCACAGGGAGAAAGAAATGCTTGTGTGGCTCATCAAATTGCCGTGGTTCTTTTGGTTGA 2010 0.4169 MEEGLCQNSVPASGSVDKSRIVEVKPLRSLAPVLPKSLESSLSGKYSSGFPPFVLFEEPREPTPQPSPVPIPAPIRSYRNPLDEEETPQGANGDKSSSMGGLNDNCVADSGKSLNTGKLSQKRSKKTQASHTNSVSFVGGISLAQRDDGDREGVNLVLMTFDSLRRRLCQLEDAKKLNTMMAIKRADLRASNALTAKGFRTNAKKRVGAVPGVEIGDIFFLRIEMCLVGLHGQSMGGIDYMTIKDELQGEPVAVSIVSSGVYDDDAEDSDVLIYSGQGENFNKKDKHVTDQKLQRGNLALDKSSRRHNEVRVIRGLRDAMNRSAKIYVYDGLYKIQDSWIEKVKSGGGVFKYKFVRLPGQPSAFSVWKSVQKWKTDSTSRPGLILTDLSKGAESFPVSLVNEVDNEDGPSCFTYFQSLKHPKPFSSMQPSYGCNCNKMCVPGDLNCVCIQRNEGDFPYTVNGVLVSRKPLVHECGPMCKCFPNCKNRVSQTGLKHQMEVFKTKDRGWGLRSLDPIRAGTFICEYAGEVIDRDEVNQNRGDNDEYVFYTSHIYEPFKWNYEPSLLEEISSNVSSEDYAISSPLIVNAKNVGNVARYMNHSCSPNIFWQPVLYAENSQSFLHVAFFALRHIPPMTELTYDYGCSGHAERSSAPTGRKKCLCGSSNCRGSFG* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0878 669 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 667 - -
Apr5g0878 669 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 667 - -
Apr5g0878 669 SMART G9a_1 203 360 IPR003105 -
Apr5g0878 669 ProSiteProfiles Post-SET domain profile. 653 669 IPR003616 -
Apr5g0878 669 ProSiteProfiles Pre-SET domain profile. 431 492 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr5g0878 669 MobiDBLite consensus disorder prediction 56 131 - -
Apr5g0878 669 MobiDBLite consensus disorder prediction 91 131 - -
Apr5g0878 669 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 669 IPR025794 GO:0016571
Apr5g0878 669 SMART set_7 495 646 IPR001214 GO:0005515
Apr5g0878 669 SUPERFAMILY SET domain 394 666 IPR046341 -
Apr5g0878 669 Pfam SET domain 506 640 IPR001214 GO:0005515
Apr5g0878 669 ProSiteProfiles SET domain profile. 495 640 IPR001214 GO:0005515
Apr5g0878 669 MobiDBLite consensus disorder prediction 57 75 - -
Apr5g0878 669 Gene3D - 190 377 IPR036987 -
Apr5g0878 669 SMART preset_2 385 479 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr5g0878 669 Pfam SAD/SRA domain 207 360 IPR003105 -
Apr5g0878 669 ProSiteProfiles YDG domain profile. 208 356 IPR003105 -
Apr5g0878 669 Pfam Pre-SET motif 389 487 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr5g0878 669 SUPERFAMILY PUA domain-like 190 378 IPR015947 -
Apr5g0878 669 Gene3D SET domain 378 668 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0878 Apr-Chr5 12872291 12875164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0878 107 669 Su(var)3-9 homologs AT5G04940 57.345 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr5g0878 SAD_SRA 3.4e-47 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0944 2 15428589 15432239 Apr5g0878 5 12872291 12875164 PCT