Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0874 ATGTCTCCTTATGGAAAAGTCGATGAAGCCGACCAAGCCATGCTCGAACTTCGCCGCAAAAACCGAAAGCGAATCACAATCATAACCTTGTCCACAATAGTTCTCATTGGTGTTGTGTGTGCTGCTGTTTTTGGAACCGTTGCACACACCAACAACAATGCAAGTGACAACAACAATGATGCAAGTGCTCAAGCTCTTTCCAATTCGGTGAAGGCTATTTGTGACGTGACATTGTACAAGGATGCATGTTATAGCAGCCTTGGTTCTCTTGCGCACTCGGGTCAGGTTCAACCTGAAAAGTTGTTTTTGTTGTCAATTGAGGTGGCCTTATCTGAGGTTGCAAGAGCTGTTCAGTATTTCTCTGACAAGGGAGTTTTCAATGGCTTGAATGTTGATAATAGGACTAAGCAAAGTTTTCAAAATTGCAAGGAGCTTTTGGGTCTTGCAATTGATCATCTTAATAGCACTTTGTCTTCTGGGGAAAACTCTTCCTTGCTTGATGTTTTGGACGATCTTAAAACTTGGTTGAGTGCTGCAGGCACTTATCAGCAAACTTGCATTGACGGCTTTGAGGAGGCAGAAGCAGCACTGAAGACCAGTGTTGCAAACAATCTGAAAAATTCTACAGAGTTCACCAGTAACACTCTTGCCATTGTTACATGGCTTGACAAGGCTGCAAGCACAGTGACCTTCAGGCGCTTGTTGAGTGCTTTACCACATCACAATGAAGAACCAAAGTGGCTTGATTCTAAAGACCGGAAGCTGTTTCAAACAAAAGATTTGAGGACTAAAGCAGACATTGTTGTAGCGAAAGATGGAAGTGGAAAGTATAAAACAATTTCTGCTGCACTTAAACATGTCCCCAAAAAAAGTGACAAGAGGACTGTGATTTATGTGAAGAAGGGGGTCTATTATGAAACTGTTACAGTGGACAAGACCAAATGGAATGTCATGATCATTGGCGATGGAATGAATGTTACAATTGTATCTGGAAGCCTTAACTTTGTAGATGGCACCCCAACATTTTCATCTGCAACATTTGCTGTGTTTGGGAAGAATTTCATTGCAAGGGACATGGGATTTCGCAACACAGCTGGTCCACAGAAGCACCAGGCAGTGGCACTAATGACAAGTGCTGATCAAGCAGTTTACTATAGGTGTCAAATTGATGCATTTCAGGACAGTCTCTATGCTCATTCCAACCGCCAATTCTACAGAGAATGCAACATTTATGGCACAGTTGATTTCATTTTTGGCAATTCAGCAGTGGTCTTCCAGAACTGCAACATTTTGCCCAAAGTGCCTATGCAAGGCCAGCAGAACACAATCACAGCACAAGGCAAAACTGACCCCAACATGAACACAGGAATTTCAATTCAAAATTGCAGCATTTCACCCTTTGGGAACTTGAGTTCTGTCCATACATACCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTCTTTATACAATCCACATTGGGAAGCTTTATTGACTCAAATGGGTGGTTACCATGGGTAGGAAACTCAGCACCAGATACCATATTTTATGCTGAGTTTCAGAATGTTGGACCTGGTGCTTCAACAAAGAATAGGGTGAAGTGGAAGGGTGTGAAAACCATTACAGCTAAACAAGCTACCAAGTTTACAGTGAAGGCTTTTCTTTCAGGGAACAAGTGGATTCCAGCTTCGGGTGTCCCCCATAAATCTTCTCTGTGA 1719 0.4258 MSPYGKVDEADQAMLELRRKNRKRITIITLSTIVLIGVVCAAVFGTVAHTNNNASDNNNDASAQALSNSVKAICDVTLYKDACYSSLGSLAHSGQVQPEKLFLLSIEVALSEVARAVQYFSDKGVFNGLNVDNRTKQSFQNCKELLGLAIDHLNSTLSSGENSSLLDVLDDLKTWLSAAGTYQQTCIDGFEEAEAALKTSVANNLKNSTEFTSNTLAIVTWLDKAASTVTFRRLLSALPHHNEEPKWLDSKDRKLFQTKDLRTKADIVVAKDGSGKYKTISAALKHVPKKSDKRTVIYVKKGVYYETVTVDKTKWNVMIIGDGMNVTIVSGSLNFVDGTPTFSSATFAVFGKNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYRCQIDAFQDSLYAHSNRQFYRECNIYGTVDFIFGNSAVVFQNCNILPKVPMQGQQNTITAQGKTDPNMNTGISIQNCSISPFGNLSSVHTYLGRPWKNYSTTVFIQSTLGSFIDSNGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGVKTITAKQATKFTVKAFLSGNKWIPASGVPHKSSL* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0874 572 Gene3D - 261 572 IPR012334 -
Apr5g0874 572 PANTHER PECTINESTERASE 4 567 - -
Apr5g0874 572 CDD PMEI-like_3 72 224 - -
Apr5g0874 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 224 IPR035513 -
Apr5g0874 572 Pfam Pectinesterase 266 558 IPR000070 GO:0030599|GO:0042545
Apr5g0874 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 222 IPR006501 GO:0004857
Apr5g0874 572 SMART PMEI_2 65 218 IPR006501 GO:0004857
Apr5g0874 572 PANTHER PECTINESTERASE 4 567 - -
Apr5g0874 572 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Apr5g0874 572 SUPERFAMILY Pectin lyase-like 263 568 IPR011050 -
Apr5g0874 572 Pfam Plant invertase/pectin methylesterase inhibitor 69 218 IPR006501 GO:0004857
Apr5g0874 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 222 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0874 Apr-Chr5 12831085 12834793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0874 2 572 Carbohydrate Esterase AT3G10710 56.370 0.0 674