Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0873 ATGGCAACCCCATCAATGTCCTTCTTTCCCTTATTCCTTCTCTCTCTCTTTCTCCTTCTACCATTACTCATAGCTCAAGCTCCATCTCCTCCTTCATCCTCTTCAGCATGCAAATCCACATTATATCCAAAACTATGCCGTTCCATTCTCTCATCCATACGTTCATCTCCTTCTGATCCCTACCACTTGGGAAAATTCTCTATCAAACAAAGCCTCAAAGAAGCCAAGAAACTAGACAAAGTGTTTGATAAATTCCTTAATAAACACCACTCTTCTTCCCCTTCTCTCAACAATGCTGAGTTTGCAGCACTAGAAGACTGCAGTGAGCTCAACAAGCTTAACGTGTACTACTTGGACACAGTTTCAGAAGAGCTGAAATCTGCTGACTCATCGAACACTGAGTTGGTGGAAAATATTGAAACCTATCTGAGTGCTGTGGCCACTAACCACTACACTTGTTATGATGGATTGGTGTTGACAAAGAGCAACATTGCCAATGCTCTTGCGGTGCCTCTAAACAATGTCACACAACTTTACAGTGTGTCACTTGGTTTGGTCACGCAGGCTTTGAATAAAAACCTTGAGAAACATAAGACCCGCAAACATGGTCTTCCCACCAAGGATTACAAGGTCAGGCAGCCACTTGAAAAACTCATTAAGCTTCTTCGCACAAAGTATAGTTGCAACAAATCATCAAATTGTACAAGAAGTGAAAGGATTCTTAAAGAAAGCCATAGCGAAGGAATTCTAGTGAAGGGGTTTGTGACTGTGAGCATTGATGGCACAGACAACTTCACTTCCATTGTAGAGGCAATTACAGCTGCACCCGATAATCTAAAGCCAGAAGATGGCTATTTTCTTATCTATGCCAGAGAAGGATACTATGAGGAATATGTCACTGTTCCCAATCAAAAGAAGAATATATTGCTTGTTGGTGATGGTATCAACAAAACTTGCATCACAGGAAATCATAGTGTCATGGATGGTTGGACCACTTTCAATTCTTCAACCTTTGCTGTCTCTGGAGAAAGATTCATTGCAGTGGATGTTACATTCAGAAACACAGCTGGCCCACAGAAGCACCAAGCAGTTGCTGTGAGGAACAATGCAGATCTCTCCACATTCTACCGTTGCAGCTTTGAAGGATACCAAGACACTCTCTATGTTCACTCACTCAGGCAATTCTACAGGGAATGTGACATTTATGGCACTGTGGATTTCATTTTTGGCAATGCTGCAGTGGTGTTCCAGAATTGCAACATATATGCTAGAAAACCATTGCCAAACCAAAAGAATGCTGTGACAGCACAAGGGAGAACTGATCCAAATCAAAACACTGGAATTTCAATACAAAATTGTAGGATTGATGCTGCACCTGACTTGGGTGAAGACTTGACTTCCATTCAAAATTACTTAGGTAGGCCTTGGAAAGTTTATTCAAGGACTGTGTATATGCAGTCATATATTGGAGGGCTAATTCAATCTGATGGATGGTTAGAGTGGAATGGCACAGTAGGATTAGACACCCTTTTTTATGGTGAGTTCAATAACTATGGACCTGGTGCTGATACCAGCAAGAGGGTACAATGGCATGGTTATAATCTGTTGAATGCTACTCAAGCTTGGAACTTTACTGTGCTTAATTTTACCTTGGGGAATACTTGGCTTCCGGAGACAGATATACCCTACTCTGAAGGACTCTAG 1704 0.4161 MATPSMSFFPLFLLSLFLLLPLLIAQAPSPPSSSSACKSTLYPKLCRSILSSIRSSPSDPYHLGKFSIKQSLKEAKKLDKVFDKFLNKHHSSSPSLNNAEFAALEDCSELNKLNVYYLDTVSEELKSADSSNTELVENIETYLSAVATNHYTCYDGLVLTKSNIANALAVPLNNVTQLYSVSLGLVTQALNKNLEKHKTRKHGLPTKDYKVRQPLEKLIKLLRTKYSCNKSSNCTRSERILKESHSEGILVKGFVTVSIDGTDNFTSIVEAITAAPDNLKPEDGYFLIYAREGYYEEYVTVPNQKKNILLVGDGINKTCITGNHSVMDGWTTFNSSTFAVSGERFIAVDVTFRNTAGPQKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCRIDAAPDLGEDLTSIQNYLGRPWKVYSRTVYMQSYIGGLIQSDGWLEWNGTVGLDTLFYGEFNNYGPGADTSKRVQWHGYNLLNATQAWNFTVLNFTLGNTWLPETDIPYSEGL* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0873 567 Pfam Plant invertase/pectin methylesterase inhibitor 34 184 IPR006501 GO:0004857
Apr5g0873 567 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Apr5g0873 567 Pfam Pectinesterase 255 552 IPR000070 GO:0030599|GO:0042545
Apr5g0873 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 189 IPR035513 -
Apr5g0873 567 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 188 IPR006501 GO:0004857
Apr5g0873 567 SMART PMEI_2 28 185 IPR006501 GO:0004857
Apr5g0873 567 Gene3D - 251 567 IPR012334 -
Apr5g0873 567 PANTHER PECTINESTERASE 11 566 - -
Apr5g0873 567 SUPERFAMILY Pectin lyase-like 251 566 IPR011050 -
Apr5g0873 567 CDD PMEI-like_3 36 187 - -
Apr5g0873 567 PANTHER PECTINESTERASE 11 566 - -
Apr5g0873 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 189 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0873 Apr-Chr5 12816017 12820667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0873 36 567 Carbohydrate Esterase AT3G10720 62.127 0.0 701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0952 2 15557057 15562169 Apr5g0873 5 12816017 12820667 PCT