Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0870 ATGAAATCCTTTGCTAACCTTTTCTTAATGTTATTTGTGGCCTTGACTACCAAAATCCGAGTTTGCATGGCAGACTGTGATAATCTTCAGGATACTTGTCCAGCAGTTCCACCCAATAAGCAGACCATATTCATCAATGGTCTACAATGCAAAAACCCAGCTAATGTAACAGCTCAAGATTTCAGGAGCACAGAACTAAGCAAAGCTGGCTCTAGAGACATTTTTGGTGCATCCATAAAAATTGTCACTGCTGCTGATTTTAGTGGCCTGAATACTCTAGGCCTTTCAATTGGAAGAACTGACATTGAAGAGAATGGCTTGGTAAACTTCCACTATCATCCTAGAGCTACTGAGATGATCTTTGTTACCAAAGGTGTATTATTAGTTGGATTTGTTGATACCAAAAATGAGTTTTTCCAAAGGTATCTCAAAGTTGGTGATGTTTTTGTTTTCCCCAAGGCTTTGTTCCACTTCTGTCTTAATTTTGGTTTTGAAGAAGCCACTATCTTCTCAGTGTTCAACAGCCAAAATCCTGGGTTTGTATCCCTTAGTCCTACAACTTTTGACACAACATTGGAATCATTAGACAAGTTAAAGAGTAGACTCATCTCACGTTCTGCTTCTGAAGCTCAAGATGTTACCAGTTTCATCTCTCCAGAATTGGAAAGCATTTTCAGTTAG 681 0.3877 MKSFANLFLMLFVALTTKIRVCMADCDNLQDTCPAVPPNKQTIFINGLQCKNPANVTAQDFRSTELSKAGSRDIFGASIKIVTAADFSGLNTLGLSIGRTDIEENGLVNFHYHPRATEMIFVTKGVLLVGFVDTKNEFFQRYLKVGDVFVFPKALFHFCLNFGFEEATIFSVFNSQNPGFVSLSPTTFDTTLESLDKLKSRLISRSASEAQDVTSFISPELESIFS* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0870 226 SMART Cupin_1_3 67 189 IPR006045 -
Apr5g0870 226 SUPERFAMILY RmlC-like cupins 41 200 IPR011051 -
Apr5g0870 226 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 10 212 - -
Apr5g0870 226 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 10 212 - -
Apr5g0870 226 CDD cupin_OxOx 25 194 - -
Apr5g0870 226 Pfam Cupin 76 198 IPR006045 -
Apr5g0870 226 Gene3D Jelly Rolls 24 215 IPR014710 -
Apr5g0870 226 ProSitePatterns Germin family signature. 106 119 IPR019780 GO:0030145
Apr5g0870 226 PRINTS Germin signature 111 131 IPR001929 GO:0030145
Apr5g0870 226 PRINTS Germin signature 141 161 IPR001929 GO:0030145
Apr5g0870 226 PRINTS Germin signature 174 189 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0870 Apr-Chr5 12776817 12777579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0870 20 220 Miscellaneous Gene Families AT3G05930 36.946 4.56e-37 127