Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0867 ATGGGACAAGAAACCAGAAACCTCTCAGATGAGTACGAGGTTTCAGAAGTCCTAGGTAGAGGTGGATTTTCTGTTGTCAGAAGAGGCACAAAAAGATCAAGCAGTGAGAATAAAACCCATGTAGCTATCAAAACACTGAGAAGATTAGGTAACCCTTCTTCTTCTTCTTCCTCGGCTGGGTTACACCGACCAAAAGGTGGAGAGAAGAGCACAGCAGCTATGATGGGGTTCCCCACATGGAGACAAGTGTCAGTCTCAGATGCCTTGCTCACGAATGAGATTCTTGTGATGAGGAGGATAGTGGAGAGTGTTTCACCACACCCCAATGTGATTGACCTCTATGATGTGTATGAGGACTCAAATGGGGTCCATCTTGTGTTGGAGCTATGTTCTGGTGGGGAATTGTTTGATAGGATTGTGGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGGTGTGGTTCGCCAGATAGCATCAGGATTAGAGGCTATTCATAGAGCTAACATTGTCCATAGGGACTTGAAACCTGAGAATTGCTTGTTCTTAGATGTGACCAAGGACTCTCCTCTTAAGATCATGGACTTCGGGTTGAGTTCTGTTCAGGAGTTTACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGACTATGTTTCACCAGAGGCTCTATCTCAAAGAAACATTACTACCAAGAGCGACATGTGGTCTCTGGGAGTAATTCTATATATCTTACTCTCTGGGTATCCACCTTTCATTGCTCAGTCTAATCGTCAAAAGCAACAAATGATAATGAATGGGAGTTTCAGTTTCTATGAGAAGACTTGGAAGGGCATTTCCCATTCAGCAAAGCAACTAATTTCAGATCTTCTGACTGTTGATCCTACTAGGAGACCTAGTGCTCAAGATCTTCTGTGTCATCCATGGGTCTTAGGGGACAAAGCCAAAGATGTTGCAATGGACCCTGAGATAGTCTCAAGGTTGCAGAGCTTCAATGCAAGACGCAAACTGCGTGCAGCTGCAATTGCTAGTGTATGGAGCACCACAATATTCTTGAGAACCAAAAAGCTGAAATCCTTGGTAGGAACACACGATCTCACTGAAGAGGAAATAGAAAATCTCAGGATAAATTTTAAAAAGATATGTGTAAGTGGAGACAATGCGACTCTGTCAGAGTTTGAGGAGGTGCTGAGAGCAATGAAAATGGCATCATTGATCCCTTTAGCACCACGAATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGCGTGAGATACTGTGTGGCTTTTCCAGCTTCAAAAACTCCAAAGGAGATGATGCTCTCCGTTTGTGCTTCCAGATGTATGACACGGATCGATCTGGGTGCATCACTAAAGAAGAAGTAGCATCCATGCTCAGAGCTTTGCCAGAAGAGTGTCTTCCAGCTGATATAACGGAACCTGGGAAATTGGATGAAATATTTGACAGAATGGATGCCAACAGTGATGGAAAAGTTACCTTTGACGAATTCAAAGCTGCCATGCAGAGAGATAGCTCTCTCCAAGACGTGCTTCTCTCTTCTCTTCGCCCCCACTAG 1581 0.4402 MGQETRNLSDEYEVSEVLGRGGFSVVRRGTKRSSSENKTHVAIKTLRRLGNPSSSSSSAGLHRPKGGEKSTAAMMGFPTWRQVSVSDALLTNEILVMRRIVESVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVVRQIASGLEAIHRANIVHRDLKPENCLFLDVTKDSPLKIMDFGLSSVQEFTDPVVGLFGSIDYVSPEALSQRNITTKSDMWSLGVILYILLSGYPPFIAQSNRQKQQMIMNGSFSFYEKTWKGISHSAKQLISDLLTVDPTRRPSAQDLLCHPWVLGDKAKDVAMDPEIVSRLQSFNARRKLRAAAIASVWSTTIFLRTKKLKSLVGTHDLTEEEIENLRINFKKICVSGDNATLSEFEEVLRAMKMASLIPLAPRIFDLFDNNRDGTVDMREILCGFSSFKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPEECLPADITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQRDSSLQDVLLSSLRPH* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0867 526 CDD EFh 409 468 IPR002048 GO:0005509
Apr5g0867 526 SMART serkin_6 12 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0867 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Apr5g0867 526 Pfam EF hand 411 426 IPR002048 GO:0005509
Apr5g0867 526 CDD STKc_CAMK 12 307 - -
Apr5g0867 526 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Apr5g0867 526 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Apr5g0867 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 12 510 - -
Apr5g0867 526 MobiDBLite consensus disorder prediction 47 70 - -
Apr5g0867 526 Coils Coil 355 375 - -
Apr5g0867 526 Gene3D Transferase(Phosphotransferase) domain 1 136 351 - -
Apr5g0867 526 Gene3D Phosphorylase Kinase; domain 1 68 135 - -
Apr5g0867 526 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Apr5g0867 526 Gene3D Phosphorylase Kinase; domain 1 7 49 - -
Apr5g0867 526 CDD EFh 443 510 IPR002048 GO:0005509
Apr5g0867 526 SUPERFAMILY Protein kinase-like (PK-like) 5 325 IPR011009 -
Apr5g0867 526 ProSiteProfiles Protein kinase domain profile. 12 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0867 526 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Apr5g0867 526 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Apr5g0867 526 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 12 510 - -
Apr5g0867 526 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Apr5g0867 526 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Apr5g0867 526 SMART efh_1 406 434 IPR002048 GO:0005509
Apr5g0867 526 SMART efh_1 442 470 IPR002048 GO:0005509
Apr5g0867 526 SMART efh_1 484 512 IPR002048 GO:0005509
Apr5g0867 526 Gene3D - 352 520 - -
Apr5g0867 526 Pfam Protein kinase domain 89 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0867 526 PRINTS Recoverin family signature 364 383 - -
Apr5g0867 526 PRINTS Recoverin family signature 410 431 - -
Apr5g0867 526 PRINTS Recoverin family signature 434 453 - -
Apr5g0867 526 PRINTS Recoverin family signature 500 520 - -
Apr5g0867 526 Pfam EF-hand domain pair 441 510 IPR002048 GO:0005509
Apr5g0867 526 SUPERFAMILY EF-hand 353 518 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0867 Apr-Chr5 12747120 12751457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0867 89 513 EF-hand Containing Proteins AT3G10660 37.413 5.29e-81 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Apr5g0867 Pkinase 8.1e-57 CL0016