Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0864 ATGGATGTTGAGGCAGTAGATGAGGGGGAAAATAGTGATAGACCTGCTTCTAATGAAAAAGGCCAGGAACAAAATATGATTGTAGACTTGGCTGAGAGAGAAGTAAATAATCAGGATGGTGAAGCATGTAGGAAACCGCAAGTGGGTATGCTGTTTGAATCTGAAGATGCTGCAAAATCATTTTATGATGCATATGCAAGACATGTAGGATTTCGCACACATGTTGGTCAATTCAATCGAACTAAGCCTGATGGTCCAATTATAACGTGGGACTTTGCTTGTGCCAGGGAGGTATTTAAAAGGAAGAATGTAGTTAGTTGCAATGCAAAGCTTAGGGTGGAGAGAAAAGATGCAAACTGGGTAGTGACAAAATTTGTTGAGGATCATAACCATTCCCTGGCTTCATCTAGAAAGGTGCAGTACCTTCGACCCCGTAGACATTTTGTCGGTGCTACGAGGAATGTTACAGAGACATTTGATGCCAGTCATGATTCCTATGTTTCCATGAACGGAAATCATTTAGAACCGGTTAGTTTAGTTAGCAGTTCCTCACCAGCAGAAAAAAGTCATCCAATGAGAAACATTGGGTCTTTTACCTATGCAAGATCTTCTCAAAAGAGAACCCTTGGAAGAGATGCTCAAAATCTTCTAGATTATTTTAAGAAGATGCAGGGAGAAAACCCTGGCTTCTATTATGCAATACAGCTTGATGATGAAAATCGCATGACCAATGTATTCTGGGCTGATGCAAGATCAAGAACAGCTTATAATTACTTTGGTGATGCTGTAATTTTTGACACAATGTATAGACCAAATCAATACCAAGTCCCATTTGCTCCATTTACAGGAGTCAATCATCATGGTCAGATGGTTTTGTTTGGTTGTGCATTACTTCTAGATGAATCCGAGTCTTCCTTTACTTGGCTGTTCAGAACATGGCTATCTGCTATGAATGATCGACCCCCTGTCTCCATAACCACAGACCAAGATAGAGCCATACAAGCAGCTGTTGCCCAGGTGTTTCCAGAAACTCGCCACTGTATTTGTAAGTGGCACATTTTGAGAGAAGGTCAAGAAAGATTGGCTCATATTTACCTTGCTCATCCTTCATTCTATGGGGAACTATATAGCTGCATCAATTTTTCTGAGAGTAATGCGGATTTTGAATCAGCATGGAAATCTCTTCTGGATAAATATGATCTCCAGAAAAATGATTGGCTACAAGCAGTGTATAATGCTCGCAAACAATGGGCCCCTGTTTACTTTCGTGGTACTTTCTTTGCTGCAATTACTTCAAACCATGGAATTAGCTCCTTTTTTGATGGCTATGTAAATCAACAGACAACCATACCTTCATTCTTTAAGCAGTATGAAAGATCTCTTGAACATTCATTGGAAAAAGAAATAGAATCAGATTATGAGACCTTTTGCAACACACCTGTACTGAAGACTCCATCACCAATGGAACAACAGGCAGCAATTACATACACCAAGAAGATTTTTGCTAAGTTTCAGGAGGAACTGGTGGAAACTTTTGCTTATACTGCAAATAATGTTGAGAATGGTGGTCTGGTCAGTAAATACAGGGTTGCAAAATATGAACATGATCACAAGGCATACATGGTCTCAATTAATATCTCTGAAATGAAAGCGAATTGCAGCTGTCAGATGTTTGAATACTCAGGCATTCTTTGTCGACATATATTGACTGTCTTCACAGTTACAAATGTTCTAACCCTTCCATCTCACTACATTTTGAAGAGATGGACAAGAAATGCAAAATCTAGAATTGGAACAGATGAAAAAACAACATATTTACTTGGCATCGAAAATCTGACTGTACGTTTTAATAGTTTATGTCGAGAAGCCATTAAGCTTGCTGAAGAAGGGGCAATAGCTGTTGAGACTTATAACTCTGCTATGAATGCTTTAAGAGAGGGTGCTAAAAAGGTAGGTGTTGTGAAGAAAAATGTTGCAAAAGTCATGCCTCTGAGCACTCAGGGTAATGGAAGTTGTCAGGAAGACAATAGCAAGAAGAGCCCTTCATCAATTTCTGAAGTTATCCCATCATTATGGCCTTGGCAAGATTCGCTGTCACATCACTTCAATCTTAAAGACGTTGGACTTCCTGTTGCTGATCTGAATCACCCTAATATGGCTCCTGTTTCTATTCACCGAGATAATGGGCCTCCAGATAACACTGTTGTCCTTAATTGTTTCAAGTCTATGACTTGGATTATAGAAAATAAGAATTCAAGCTCATCCAGTAAAGTTGCAGTCATTAACATGAAGTTGCAAGATTATGGCAAGGGACCGTCAGGAGAGACAGAAGTGCAATTCAGGGTGACAAGGGTCACTTTGGAGCCTATGTTGAGGTCTATGGCTTACATCAGTCAACAGCTAAATGCACCTATCAATAGAGTTGCCCTCATCAATCTGAGGCTTCAGGATACAAAGGCAACTACTGGGCAAACAGAGCTGAAATTCCAAGTTTCTAGAGATACGCTTGGTTCCATGCTGAGATCTATGGCCTTCATCAGGGAGCAGCTTTAA 2553 0.3995 MDVEAVDEGENSDRPASNEKGQEQNMIVDLAEREVNNQDGEACRKPQVGMLFESEDAAKSFYDAYARHVGFRTHVGQFNRTKPDGPIITWDFACAREVFKRKNVVSCNAKLRVERKDANWVVTKFVEDHNHSLASSRKVQYLRPRRHFVGATRNVTETFDASHDSYVSMNGNHLEPVSLVSSSSPAEKSHPMRNIGSFTYARSSQKRTLGRDAQNLLDYFKKMQGENPGFYYAIQLDDENRMTNVFWADARSRTAYNYFGDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESESSFTWLFRTWLSAMNDRPPVSITTDQDRAIQAAVAQVFPETRHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFSESNADFESAWKSLLDKYDLQKNDWLQAVYNARKQWAPVYFRGTFFAAITSNHGISSFFDGYVNQQTTIPSFFKQYERSLEHSLEKEIESDYETFCNTPVLKTPSPMEQQAAITYTKKIFAKFQEELVETFAYTANNVENGGLVSKYRVAKYEHDHKAYMVSINISEMKANCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSRIGTDEKTTYLLGIENLTVRFNSLCREAIKLAEEGAIAVETYNSAMNALREGAKKVGVVKKNVAKVMPLSTQGNGSCQEDNSKKSPSSISEVIPSLWPWQDSLSHHFNLKDVGLPVADLNHPNMAPVSIHRDNGPPDNTVVLNCFKSMTWIIENKNSSSSSKVAVINMKLQDYGKGPSGETEVQFRVTRVTLEPMLRSMAYISQQLNAPINRVALINLRLQDTKATTGQTELKFQVSRDTLGSMLRSMAFIREQL* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0864 850 SMART 26again6 551 578 IPR006564 GO:0008270
Apr5g0864 850 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 794 IPR031052 GO:0006355
Apr5g0864 850 Pfam FAR1 DNA-binding domain 60 134 IPR004330 -
Apr5g0864 850 Pfam SWIM zinc finger 542 574 IPR007527 GO:0008270
Apr5g0864 850 ProSiteProfiles Zinc finger SWIM-type profile. 540 576 IPR007527 GO:0008270
Apr5g0864 850 MobiDBLite consensus disorder prediction 665 684 - -
Apr5g0864 850 MobiDBLite consensus disorder prediction 1 23 - -
Apr5g0864 850 Pfam MULE transposase domain 263 355 IPR018289 -
Apr5g0864 850 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 33 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0864 Apr-Chr5 12684194 12692566 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr5g0864 MULE 1.2e-27 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0953 2 15601382 15608977 Apr5g0864 5 12684194 12692566 PCT