Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0862 ATGAAGAGGTCTCCAACATCTTCTTGCTCTTCATCTTCTTCTTTTGGGTTTGAATCTCCCATTCAATCAGAAAAGAGAAGGCCTAAGCATCCAAGAAGGAATTTGAAGTCTCAAAAGTGTAAGCAAAACCAAGTCACTGGCAGAAGAAGCTCCATTTACAGAGGAGTTACAAGGCATAGGTGGACAGGGAGGTTTGAAGCTCACCTATGGGATAAGAGTTCTTGGAACAACATTCAGAACAAGAAGGGGCGACAAGTTTATTTGGGTGCATATGACACTGAAGAAGCTGCAGCCCGTACCTATGATCTTGCAGCCCTCAAGTACTGGGGAAAAGATGCAACCTTGAATTTCCCGATAGAAACATATGTGAAGGAGCTTGAGGAAATGGACAAAGTGTCAAAAGAAGAATACTTGGCATCTTTGCGGCGGCAAAGCAGTGGATTTTCCAGAGGCATCTCTAAGTACCGAGGGGTGGCCAGGCATCACCATAATGGCCGCTGGGAAGCTCGCATTGGAAGAGTATGTGGAAACAAGTACCTCTACTTGGGGACATATAAAACTCAGGAGGAGGCAGCTATGGCATATGACATGGCAGCAATAGAGTACCGAGGACTGAATGCAGTGACCAATTTTGACATAAGCAACTACATTGATAAAATACAGAAGAAAAATGACCAAACCCAACATACAGAACCACAAACAGAAATAGCTCCTAACTCCTCTGACTCTGAAGAAGCAGAAGAAGAACAAACAACTACACCCCCACCTGAAAATCTTTACATGCAACCACAGCAGCACCAAGCTCCACATACCCATGTTTCTCCAAGTGAAGAATCCTCACTAGTTACTATTATGGACCATGTTCTTGACCAGGACCTACCATGGAGCTTCATGTACACTGGGTTGTCTCAGTTTCAAGATCAAGACTTGGGATTAAGCAAAGGTGAGGATTTAGTGGGCATGTTTGATGGTTCAGGCTTTGAGGAAGATATTGATTTTTTGTTCAGCACAGAACCTGGTGAGAGTGATATCAATGTGAGTGCAGTTTTGGATAGTATTGAATGTGGAGTTACAAATGTGGCTAGTGGAAGCATGGTGATGGATAACAATCAGAATAAGCTATTATCCTTTGCTGCTTCTTCTTCTTCCCCATCATCTACAACAACTACACTTTCTTGTAACTACTCTCTATGA 1194 0.4305 MKRSPTSSCSSSSSFGFESPIQSEKRRPKHPRRNLKSQKCKQNQVTGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQNKKGRQVYLGAYDTEEAAARTYDLAALKYWGKDATLNFPIETYVKELEEMDKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAMAYDMAAIEYRGLNAVTNFDISNYIDKIQKKNDQTQHTEPQTEIAPNSSDSEEAEEEQTTTPPPENLYMQPQQHQAPHTHVSPSEESSLVTIMDHVLDQDLPWSFMYTGLSQFQDQDLGLSKGEDLVGMFDGSGFEEDIDFLFSTEPGESDINVSAVLDSIECGVTNVASGSMVMDNNQNKLLSFAASSSSPSSTTTTLSCNYSL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0862 397 MobiDBLite consensus disorder prediction 1 20 - -
Apr5g0862 397 SUPERFAMILY DNA-binding domain 153 214 IPR016177 GO:0003677
Apr5g0862 397 MobiDBLite consensus disorder prediction 1 48 - -
Apr5g0862 397 MobiDBLite consensus disorder prediction 223 279 - -
Apr5g0862 397 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 336 - -
Apr5g0862 397 MobiDBLite consensus disorder prediction 378 397 - -
Apr5g0862 397 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Apr5g0862 397 PRINTS Ethylene responsive element binding protein signature 194 214 IPR001471 GO:0003700|GO:0006355
Apr5g0862 397 MobiDBLite consensus disorder prediction 252 279 - -
Apr5g0862 397 SMART rav1_2 52 124 IPR001471 GO:0003700|GO:0006355
Apr5g0862 397 SMART rav1_2 154 218 IPR001471 GO:0003700|GO:0006355
Apr5g0862 397 CDD AP2 153 214 IPR001471 GO:0003700|GO:0006355
Apr5g0862 397 ProSiteProfiles AP2/ERF domain profile. 154 212 IPR001471 GO:0003700|GO:0006355
Apr5g0862 397 Gene3D AP2/ERF domain 153 214 IPR036955 GO:0003700|GO:0006355
Apr5g0862 397 Gene3D AP2/ERF domain 52 120 IPR036955 GO:0003700|GO:0006355
Apr5g0862 397 Pfam AP2 domain 52 110 IPR001471 GO:0003700|GO:0006355
Apr5g0862 397 Pfam AP2 domain 153 204 IPR001471 GO:0003700|GO:0006355
Apr5g0862 397 SUPERFAMILY DNA-binding domain 51 120 IPR016177 GO:0003677
Apr5g0862 397 CDD AP2 51 119 IPR001471 GO:0003700|GO:0006355
Apr5g0862 397 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 336 - -
Apr5g0862 397 ProSiteProfiles AP2/ERF domain profile. 52 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0862 Apr-Chr5 12670630 12675190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0862 31 254 AP2-EREBP Transcription Factor Family AT5G57390 58.515 2.83e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Apr5g0862 AP2 3.4e-13 CL0081