Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0851 ATGGATATCAGCATTTCATTCAGCCCAAACTCACTTCTTCTTTCATCATCAGAACTCGCCCCCATTTTCACGTTAACCGCACCGCGCCGCCGCACAAGGCTCAAGTTTCGAACTTCGGCCACCGCAGATGGCTCTTCGTGGCTGCAGCGCGGTTCACGCCGGTTTTGGGTGAAGTTTGGGGAAATGGTGAAGAAGGAGACGGGTTTTGACTTGAAAGAAGGTGTCTCAAATGTCGATGGTGTGAGTGTAGATGAATTGCGACGGATTGGGACTCATTCGCTGTCTCAATTTGTCGATTGGAATCGATGGGAACGTTGGAAGAATATCGAGAACTGGGAACCTAAGAGAATTGGCGCATTGGTTCTTTACAGTTTTGTTGTGGCATTTGCTTGTAGAGGAGTATATGTAGCAATTCAAGCACCGTTCATAAATCGCCAGAAAAAAGAATTGACAGAAGCTTACATGGAAGCATTAATTCCTGAGCCATCCCCTACTAACATTAGAAGATTTAAGAAGGGTATGTGGAAGAAGACAATGCCAAAAGGCCTGAAAATGAAAAAGCTTATTGAAAGACCTGATGGGATGCTTATTCATGATACTTCTTATGTTGGAGAGGATGCATGGGAGGATGATCGAGAGGTTCATGTAAAAAAAATTATAGAGGATGATGAAAGATTAAACAAAGAAGAGAAGAAAGAACTAACAAAAAACTTGGGCATTTCAGCTGTTGAAGTTCAGACTGAGGGTTCATGGCGTGAAAGACTTCATAAATGGAGTGAGATCCTTAGAAAAGAACGTCTTGCTGAGCAATTGGATTCTTTAAATGCCAAATATGTAGTTGAGTTTGACATGAAAGAGGTTGAAAATAGTCTTCGTAAGGATGTGGCAGAAAAGGTGATACCCACTCAGGGAACACAGGCTCTGTGGATAGCTAAGAGATGGTGGCGATATCGCCCTAAACTTCCATATACTTATTTTCTTGACAAACTTGATAGTTCTGAGGTAGCAGCTGTTGTCTTTACCGAAGACTTGAAAAGATTGTACGTGACAATGAAAGAAGGTTTTCCATTGGAATTTGTCGTTGATATCCCTCTTGATCCTTATCTGTTTGAGATTATTACAAGTTCTGGAGTTGAAGTAGATCTCCTTCAGAAGCAACAGATCCATTATTTTATGAAGGTTGTGATTGCATTGTTACCTGGAATACTAATTCTCTGGCTTATAAGGGAGTCTGTAACGCTTCTGTATATTACTTCCAAGCGTTTTCTTTACAAGAAGTATAATCAACTTTTTGATATGGCTCATGCAGAAAATTTCATTCTGCCAGTTGGAGATGTTGGTGAAACAAAATCTATGTACAAGGAAGTTGTGTTGGGGGGTGACGTTTGGGATCTTCTTGATGAGTTGATGATCTATATGGGAAATCCTATGCAGTTCTTTGAAAGGGAAGTGCAATTTGTTCGGGGTGTTCTTCTCTCTGGACCTCCAGGAACAGGAAAAACGCTTTTTGCCAGGACACTTGCTAAAGAAAGTGGATTACCTTTCGTTTTTGCTTCAGGCGCTGAGTTCACAGATAGTGAAAAAAGTGGAGCAGCTAGGATCAATGAAATGTTTTCCATTGCTAGGAGAAATGCACCTTGTTTTGTATTTGTCGATGAAATAGATGCTATTGCTGGAAGACATGCTAGGAAGGATCCACGAAGAAGGGCAACTTTTGAGGCTCTTATTGCACAGCTTGATGGGGAGAAGGAAAAAACTGGTGTTGACCGTCATTCCCTTAGACAAGCTGTCATATTCATTTGTGCTACCAATAGGCCAGATGAATTAGATCTTGAATTTGTTCGTCCTGGACGTATTGATCGTCGTCTTTACATTGGTTTGCCTGATGCAAAACAAAGAGTCCAAATCTTTGGTGTGCATAGTTCTGAAAAGCAACTTGCAGAGGATGTGGATTTTGAAAAGCTTGTCTTCCGTACTGTTGGATTCTCTGGAGCAGATATAAGAAATCTTGTCAACGAATCAGCAATAATGTCGGTGAGAAAAGGGCGTTCCAAAATTTTCCAGCAAGATATTATTGATGTGCTAGATAAACAACTGCTTGAGGGTATGGGTGTCCTCCTCACAGAAGAAGAGCAACAGAAATGTGAACAAAGCGTATCTTTGGAAAAGAAGAGACTGCTTGCTGTCCATGAAGCTGGTCATGTTGTGCTAGCTCACTTGTTTCCTCGGTTTGACTGGCATGCATTTTCACAGCTCCTGCCTGGTGGTAAGGAAACTGCAATATCTGTATTCTATCCTCGAGAAGATATGGTAGACCAAGGTTATACAACATTTGGTTACATGATGATGCAAATGGTTGTGGCTCATGGTGGTCGATGTGCTGAACGTATTGTATTTGGTGATGATATCACTGATGGAGGAAGAGATGATCTTGAAAAGATAACAAAGATTGCTAGGGAGATGGTAATCAGCCCTCAAAATAAAAGGTTGGGGTTAATAGCTTTAACAAAAAGGGTTGGCTTAGTTGATCGACCAGACAGTTCAGATGGCGAGTTGATAAGATATAGATGGGACGACCCTCAAGTAATTCCAGCTAATATGACACTAGAGGTGTCTGAGCTTTTTACAAGGGAGTTGACAAGGTACATTGAAGAAACTGAAGAACTTGCAATGAATGCTTTAAGGCAGAATAGGCACATTTTGGACTTGGTTGCGAGGGAACTACTGGAGAAGTCTAGAATAACTGGATTGGAGGTTGAAGAAAGATTGAAGGGTCTGTCTCCAGTAATGTTTGAGGACTTTGTGAAGCCATTCCAGATAAACCCTGAAGAGGAGGGACCGTTACCGCATAATGATCAACTACGATATCAGTTACCCGACTTGTATCCTGCTCCTCTCCATAGATGTTGA 2910 0.4148 MDISISFSPNSLLLSSSELAPIFTLTAPRRRTRLKFRTSATADGSSWLQRGSRRFWVKFGEMVKKETGFDLKEGVSNVDGVSVDELRRIGTHSLSQFVDWNRWERWKNIENWEPKRIGALVLYSFVVAFACRGVYVAIQAPFINRQKKELTEAYMEALIPEPSPTNIRRFKKGMWKKTMPKGLKMKKLIERPDGMLIHDTSYVGEDAWEDDREVHVKKIIEDDERLNKEEKKELTKNLGISAVEVQTEGSWRERLHKWSEILRKERLAEQLDSLNAKYVVEFDMKEVENSLRKDVAEKVIPTQGTQALWIAKRWWRYRPKLPYTYFLDKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEFVVDIPLDPYLFEIITSSGVEVDLLQKQQIHYFMKVVIALLPGILILWLIRESVTLLYITSKRFLYKKYNQLFDMAHAENFILPVGDVGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQFFEREVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKTGVDRHSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFGVHSSEKQLAEDVDFEKLVFRTVGFSGADIRNLVNESAIMSVRKGRSKIFQQDIIDVLDKQLLEGMGVLLTEEEQQKCEQSVSLEKKRLLAVHEAGHVVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMVDQGYTTFGYMMMQMVVAHGGRCAERIVFGDDITDGGRDDLEKITKIAREMVISPQNKRLGLIALTKRVGLVDRPDSSDGELIRYRWDDPQVIPANMTLEVSELFTRELTRYIEETEELAMNALRQNRHILDLVARELLEKSRITGLEVEERLKGLSPVMFEDFVKPFQINPEEEGPLPHNDQLRYQLPDLYPAPLHRC* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0851 969 Pfam ATPase family associated with various cellular activities (AAA) 490 626 IPR003959 GO:0005524|GO:0016887
Apr5g0851 969 PANTHER ATP-DEPENDENT PROTEASE 31 969 - -
Apr5g0851 969 Gene3D Peptidase M41 712 927 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr5g0851 969 Gene3D - 317 393 - -
Apr5g0851 969 SMART AAA_5 486 629 IPR003593 -
Apr5g0851 969 Gene3D - 629 702 - -
Apr5g0851 969 Gene3D - 447 628 IPR027417 -
Apr5g0851 969 CDD AAA 488 627 - -
Apr5g0851 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 697 IPR027417 -
Apr5g0851 969 Pfam Peptidase family M41 719 920 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr5g0851 969 Pfam AAA+ lid domain 649 691 IPR041569 -
Apr5g0851 969 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 31 969 - -
Apr5g0851 969 SUPERFAMILY FtsH protease domain-like 722 933 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0851 Apr-Chr5 12445413 12471176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0851 453 854 Miscellaneous Gene Families AT5G53170 31.296 1.09e-54 202