Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0836 ATGATTCTCCCCAATTGTTTTTTCACCAATTTCATTCAAACCAAGCGTGTCTCTCCCTTGTTCTCATTGTTTTTCAGAACCCACTTCACCAATTCACACATCAGACCAATTCTGACAAGAACGCAACAATTTCATTCAAAAACATCCCCAGAACTTCGAAACAAACGGGAATTTTGCTTCCAAGACTGTGTCCCCCTCTTGCAGCATTTGAGAGACCACAAAGACGAAAACAGTGGAAGAACCCTTCATTCTCTTTTCGTTAAAAGCGCCCTTGACAAGGATGAATTTGTACAAAACAATATGGTTAGATTTTATGGCGATATTGGAGAACTCGAGAATGCACACAAATTGTTTGGTGAAATTCCTCAACCGAGTTTGATCTCTTGGACCAGCATGGTCTCTTGTTATGTCAACGTGGGGCAACATGAAATGGGTCTAAGCTTGTTTCGTGGCTTATGTCGGTCGGGGATGCACCCAAATGAGTATGGTTTCTCGGTGGCACTCAAGGCTTGCAGGGTGATGTGTGATCCTGTGATGGGGAAGCTCATTCATGGGTTGATACTCAAATGTGGGTTTGATTCGCATAGCTTTTGCAGTGCTTCAATTCTTCACTTGTATGCTGATTGTGGTGATGTTGAGAATTCGAGAAAGGTTTTTGATGGGGTTTGTTTTGGTGAAAGGTGTGAGGCACTGTGGAATACTTTGCTGAACGCTCATGTCGAGATGTCTGATGTGGAGAGCTCTCTGAAGTTGTTTAATGAGATGCGGCACTCTTCCGTGTCGCCGAATCATTTTACTTACACCATTTTTGTTAAACTCTGTGCTGATGTGTTGGATGTTGAACTTGGAAGGTCTGTTCATGGCCAGGCTGTGAAGAGTGGAATTGAAAATGATGTTGTGGTGGGTGGGGCTCTTGTTGACTGCTATGTTAAACTGGGATTATTTAATGATGCTTGTAAAGTGTTTCAAATTCTTGAAGAGAAGGATAATGTGGCAATCTGTGCTTTACTTGCTGGCTTTAATCAGTTTGGAAAATCAAAGGAAGGATTTTCCTTATATGTTGACTTTCTTTATGAAGGGAATAAACCAGATCCATTTACTTGTGCAAGTGTTGTTAGTTTGTGCTCAAATTTGGAGACAGAGCTTTCTGGTACTCAAGTTCACTGTGGTTTCATCAAACTTGGCTTTAAGATGGATTCATATATTGGCAGTGCCTTTATCAACATGTATGGAAACTTTGGCATGATATCCGATGCTTATAAATGTTTTCTTGCTATTCACATTAAGAATGAAATATGTATAAATGCCATGATGAATAGTTTAATTTTCAATTCTTATGATTTGAAAGCTTTAGAGCTGTTCTGTGGGATGAGGGAAGTTGGTATTGCCCAAACCAGTTCTTCAATCATTTATGCTCTGCGTGCTTGCGGGAACCTTTTTATGCTAAAAGAAGGAAGATCTGTTCATTCGTATTTGATTAAAAATCCTTTTGAAGATGACTCTAGGTTGGGCACTGAAAATGTTCTTCTAGACATGTATGTTAGATGTAGAGCTGTTAATGATGCAAAATTGATTTTCAAAAAGATGCCAAGACAAAATGAGTTTTCCTGGACTACTATCATATCTGGATGCAGTGAATCAGGGCACTCTGTAGAAGCTCTGGGGATCTTCCGCGATATGCTTCTATATTCAAAACCTAGTCAGTTCACCTTAATTAGTGCTATTCAGGCATGTGCAGAAATAAAGGCACTTGAAGTAGGAAAACAAGTCCATTGTTATATCATGAAAGTAGGATTTGGATATTATCCTTTTTTGGAAAGTGCCCTGATTAACATGTATGCAGTGTTTAAACATGAAACTTTGAATGCTTTACAGGTATTCTTGTCCATGAAAGAGCAAGATCTTGTCTCATGGAGTGCCATGTTAACTGCATGGGTCCAAAATGGTTTTCATGAAGAAGCACTTAAGCTTTTCACAGAATTCCAAACTGTTCCCATTTTTCAGGTTGATGAGTCTATCATATCCAGCTGTATCTCAGCAGCTGCTGGCTTATCAGCATCAGACACAGGCAAATGTTTCCATTCCTGGGTTATCAAAACTGGCCTTGAGGTTAATCTACATGTGGCTTCTTCCATTATAGACATGTATAGTAAATGTGGAAACATAAAAGATGCCATCACGTATTTCAATACCATCAGTCACCATAATTTAGTAACATGGACGGCCATGATATATGGATATGCTTATCACGGGCGTGGAAGAGAAGCTATTGACCTGTTTAACAAGGCTAAAGAAGCTGGGTTGGAACCTGATGGTGTCACCTTTGCTGGGGTTTTAGCTGCATGTAGTCATGCAGGACTAGTGGAGGAAGGTTGCCAATATTTTGAGTACATGAGAAGTAAATACAGCTATGAAGTGACCATAAATCATTATGCCTGCATGGTTGATCTTTTTGGTCGAGCTGCAAAATTGGAAGAAGCAGAAGCTTTGATAAAGGAAGCTCCATTTCAGTCAAAATCTCTTCTATGGAAGACTTTCCTAGGTGCGTGCTCTAAACATGAAAATGCTGACATTGGAGACAGAATATCAAACTTGCTTGCTGGTATAGAATTGAATGAACCGTCAACCTATGTTCTACTGTCTAACATTTATGCATCAGCATCAATGTGGAAAAGTTGCACAGAGTTGAGAAACAAAATGGTAAAAGGGAGTGTTACAAAGCAACCAGGTAGTAGTTGGATTCAATTGGCTGGTTAA 2757 0.3964 MILPNCFFTNFIQTKRVSPLFSLFFRTHFTNSHIRPILTRTQQFHSKTSPELRNKREFCFQDCVPLLQHLRDHKDENSGRTLHSLFVKSALDKDEFVQNNMVRFYGDIGELENAHKLFGEIPQPSLISWTSMVSCYVNVGQHEMGLSLFRGLCRSGMHPNEYGFSVALKACRVMCDPVMGKLIHGLILKCGFDSHSFCSASILHLYADCGDVENSRKVFDGVCFGERCEALWNTLLNAHVEMSDVESSLKLFNEMRHSSVSPNHFTYTIFVKLCADVLDVELGRSVHGQAVKSGIENDVVVGGALVDCYVKLGLFNDACKVFQILEEKDNVAICALLAGFNQFGKSKEGFSLYVDFLYEGNKPDPFTCASVVSLCSNLETELSGTQVHCGFIKLGFKMDSYIGSAFINMYGNFGMISDAYKCFLAIHIKNEICINAMMNSLIFNSYDLKALELFCGMREVGIAQTSSSIIYALRACGNLFMLKEGRSVHSYLIKNPFEDDSRLGTENVLLDMYVRCRAVNDAKLIFKKMPRQNEFSWTTIISGCSESGHSVEALGIFRDMLLYSKPSQFTLISAIQACAEIKALEVGKQVHCYIMKVGFGYYPFLESALINMYAVFKHETLNALQVFLSMKEQDLVSWSAMLTAWVQNGFHEEALKLFTEFQTVPIFQVDESIISSCISAAAGLSASDTGKCFHSWVIKTGLEVNLHVASSIIDMYSKCGNIKDAITYFNTISHHNLVTWTAMIYGYAYHGRGREAIDLFNKAKEAGLEPDGVTFAGVLAACSHAGLVEEGCQYFEYMRSKYSYEVTINHYACMVDLFGRAAKLEEAEALIKEAPFQSKSLLWKTFLGACSKHENADIGDRISNLLAGIELNEPSTYVLLSNIYASASMWKSCTELRNKMVKGSVTKQPGSSWIQLAG* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0836 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Apr5g0836 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 736 770 IPR002885 -
Apr5g0836 918 Pfam PPR repeat 304 328 IPR002885 -
Apr5g0836 918 Pfam PPR repeat 535 561 IPR002885 -
Apr5g0836 918 Pfam PPR repeat 710 730 IPR002885 -
Apr5g0836 918 Pfam PPR repeat 636 660 IPR002885 -
Apr5g0836 918 Pfam PPR repeat 127 156 IPR002885 -
Apr5g0836 918 Pfam PPR repeat 507 531 IPR002885 -
Apr5g0836 918 Gene3D Tetratricopeptide repeat domain 500 593 IPR011990 GO:0005515
Apr5g0836 918 Gene3D Tetratricopeptide repeat domain 278 387 IPR011990 GO:0005515
Apr5g0836 918 Gene3D Tetratricopeptide repeat domain 388 485 IPR011990 GO:0005515
Apr5g0836 918 Gene3D Tetratricopeptide repeat domain 181 277 IPR011990 GO:0005515
Apr5g0836 918 Gene3D Tetratricopeptide repeat domain 40 176 IPR011990 GO:0005515
Apr5g0836 918 Gene3D Tetratricopeptide repeat domain 667 917 IPR011990 GO:0005515
Apr5g0836 918 PANTHER - 564 916 - -
Apr5g0836 918 PANTHER - 66 561 - -
Apr5g0836 918 PANTHER - 63 171 - -
Apr5g0836 918 Pfam PPR repeat family 230 275 IPR002885 -
Apr5g0836 918 Pfam PPR repeat family 736 782 IPR002885 -
Apr5g0836 918 PANTHER - 63 171 - -
Apr5g0836 918 PANTHER - 66 561 - -
Apr5g0836 918 PANTHER - 564 916 - -
Apr5g0836 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Apr5g0836 918 Pfam E motif 853 915 IPR046848 -
Apr5g0836 918 TIGRFAM PPR: pentatricopeptide repeat domain 127 161 IPR002885 -
Apr5g0836 918 TIGRFAM PPR: pentatricopeptide repeat domain 231 263 IPR002885 -
Apr5g0836 918 TIGRFAM PPR: pentatricopeptide repeat domain 738 771 IPR002885 -
Apr5g0836 918 TIGRFAM PPR: pentatricopeptide repeat domain 535 561 IPR002885 -
Apr5g0836 918 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0836 Apr-Chr5 12095961 12098717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0836 233 917 Glycoside Hydrolase AT3G49170 31.760 3.60e-111 360