Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0829 ATGGCAAGAGCAGCTTACAATCACCTTCACTTGGTTCCCAGTTTAGTTCATCCTTTGAAGTCACCCCTCTTCAGAAATCACACTCTTTTCACCTCACACACTCGCCTCTATGGTATTCAACGAAGGTTCTCTTCTTCTTCATCCAAGATAAGCATGAGTCTCAAGGCTGGCATCGTTGGCCTCCCCAACGTTGGCAAGTCCACTCTCTTTAATGCCGTTGTGGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCCCGTCTCAATGTGCTCTCCGATCTTAGCAAATCTCAACGAGTAGTTCCAGCATCAATAGAATTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGGACTGGGTAATAAGTTTTTATCACATATTCGTGAAGTTGTAAGATGTTTTGAAGACAATGACATTGTTCATGTGAATGGGAAAGTTGACCCCAAGTCTGATATTGATGTCATCAACTTGGAGCTTGTTTTCTCAGACCTGGACCAGATTGATAAAAGAATGGATAAACTAAAGAAAGGCAAGGCGAAGGATTCACAATCAAAACTCAAGGAAGAGGCAGAAAAGTCTGGATTGGAAAAGATTTGTCAGGCTCTGATGGATGGAAAACCTGCACGGTCGGTGACCTTAACAGATTTTGAAAGGGATGCTATAAAGCATCTCTGCTTGCTCACCATGAAACCTATTATATATGTAGCAAATGTTGCAGAATCTGATCTAGCTGATCCTACAAACAATAATTATCTAAAGGATGTCACAAATGTTGCATCTGCGTTGCAGTCAGGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAACTACCAATTGAAGAAAGAGAAGAATATTTGAAATCTCTTGGTGTAAGTGAAAGTGGTCTTGGGAACCTAATTAGGGCAACCTATGACCTTTTGGGGCTGCGTACTTATTTTACTTCTGGTGAGAAGGAGACAAAAGCATGGACAATACTTGCAGGAATGACTGCACCTCAAGCTGCTGGAGTTATTCACTCTGACTTTGAGAAGGGTTTCATTCGAGCAGAAACTGTGTCATATGATGATTTTGTTGCTGCTGGTTCACTAGCTGCAGCGCGAGAGAAAGGACTTTTGAGATCTGAAGGTAAAGACTACATTGTACAAGAAGGAGATGTCATGCTGTTCCGATTCAATGTGTAG 1248 0.4191 MARAAYNHLHLVPSLVHPLKSPLFRNHTLFTSHTRLYGIQRRFSSSSSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLNVLSDLSKSQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIDKRMDKLKKGKAKDSQSKLKEEAEKSGLEKICQALMDGKPARSVTLTDFERDAIKHLCLLTMKPIIYVANVAESDLADPTNNNYLKDVTNVASALQSGIVTISAQVEAELTELPIEEREEYLKSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0829 415 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 54 330 IPR031167 GO:0005525
Apr5g0829 415 Hamap Ribosome-binding ATPase YchF [ychF]. 53 415 IPR004396 GO:0005524|GO:0005525|GO:0016887
Apr5g0829 415 PANTHER OBG GTPASE FAMILY 52 415 - -
Apr5g0829 415 CDD YchF 56 329 IPR041706 -
Apr5g0829 415 SUPERFAMILY TGS-like 331 412 IPR012676 -
Apr5g0829 415 Gene3D - 159 249 IPR023192 -
Apr5g0829 415 PANTHER OBG-LIKE ATPASE 1 52 415 - -
Apr5g0829 415 PRINTS GTP1/OBG GTP-binding protein family signature 56 76 IPR006073 GO:0005525
Apr5g0829 415 PRINTS GTP1/OBG GTP-binding protein family signature 78 96 IPR006073 GO:0005525
Apr5g0829 415 PRINTS GTP1/OBG GTP-binding protein family signature 122 137 IPR006073 GO:0005525
Apr5g0829 415 PRINTS GTP1/OBG GTP-binding protein family signature 139 157 IPR006073 GO:0005525
Apr5g0829 415 Pfam 50S ribosome-binding GTPase 56 152 IPR006073 GO:0005525
Apr5g0829 415 PIRSF EngD 51 415 IPR004396 GO:0005524|GO:0005525|GO:0016887
Apr5g0829 415 Gene3D - 54 330 IPR027417 -
Apr5g0829 415 CDD TGS_YchF_OLA1 329 413 IPR013029 -
Apr5g0829 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 353 IPR027417 -
Apr5g0829 415 Pfam Protein of unknown function (DUF933) 331 414 IPR013029 -
Apr5g0829 415 TIGRFAM TIGR00092: GTP-binding protein YchF 52 415 IPR004396 GO:0005524|GO:0005525|GO:0016887
Apr5g0829 415 Gene3D - 100 414 IPR012675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0829 Apr-Chr5 11997508 12023455 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0829 5 11997508 12023455 Apr5g0829 5 11997508 12023455 ECH