Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0827 ATGGCTGTTGAGGCTCGTCGTATTAACCTTTTCCCTCCGCAACTCATACCCAACCGAGAAATATTGACCAACCCAATAGACGCAAGCATCATCCACATGTACAATACCCAAACAATCAATCACTCCATGCTGCCTCTCTCCGCCGTCACCATCACCGCCTCGGATACTCTCTTCTCGGCGGCGCCACCGTTTCCGTACAATCCCCTCCCTAACAAAACCGCCACCTTGAAATCCGACAACAGTACTCTCTCCTACAACAACAACGACAACGTCGTTTCGGTTCCCAGGAAGCGATCCCGAGACTCAATCAGCAGCTGCCATTTCCCTTGGTATCACAAGAACAACACCGACACTTTCTCCTTCCTCGGCGAAGACATTTCTCTCCACATCCACCGCCAACAACTCGATCTCGACAACCTCATTTCTCACCACATGGAGAAGGTGAGGGTGGAATTGGAGGAGAAGAGGAAGAGGCAAGCGAGAAGGTTAATGGAAGCAATTGAGGTGGGGATGATGAAGAGGCTAAAGGCAAAGGAGGAAGAGATTTTGAAGATAGAGAAACTGAACTATGCATTGGAAGAGAAAGTCAAGTCTTTGTGCATTGAAAACCAGATATGGCGAGACCTGGCACAAACAAACGAGGCCACAGCCAATGCCCTCCGAACCAACCTAGAGCATGTGCTCTCGCAGGTCGGTGCAGACGGCGGAGAGGGTGCCGGGGTTCCGCCGGCAGAGGAGGAGGACGCGGAGTCGTGCTGCGGAAGCAACGAGGAAGGATGGCGCACGGTAGCGACGGGGGCGCAGGACAAGGAAGGGGAAGGAACAGGCGGAGTAATGAATAATAGTAACGGTGGTGACGAGAGAAGATTGTGTAGGAAGTGTGGGAAAGAGGAATCGTGCGTGCTAATCTTGCCCTGCCGGCACCTCTGCCTCTGCACTGTTTGTGGGTCTACACTGCACATTTGTCCTGTGTGTAAATCCTTCAAAAATGCCAGTGTCCATGTTAACATGACTTAA 1017 0.5182 MAVEARRINLFPPQLIPNREILTNPIDASIIHMYNTQTINHSMLPLSAVTITASDTLFSAAPPFPYNPLPNKTATLKSDNSTLSYNNNDNVVSVPRKRSRDSISSCHFPWYHKNNTDTFSFLGEDISLHIHRQQLDLDNLISHHMEKVRVELEEKRKRQARRLMEAIEVGMMKRLKAKEEEILKIEKLNYALEEKVKSLCIENQIWRDLAQTNEATANALRTNLEHVLSQVGADGGEGAGVPPAEEEDAESCCGSNEEGWRTVATGAQDKEGEGTGGVMNNSNGGDERRLCRKCGKEESCVLILPCRHLCLCTVCGSTLHICPVCKSFKNASVHVNMT* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0827 338 ProSiteProfiles Zinc finger RING-type profile. 291 326 IPR001841 -
Apr5g0827 338 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 337 - -
Apr5g0827 338 MobiDBLite consensus disorder prediction 232 252 - -
Apr5g0827 338 Pfam Zinc finger, C3HC4 type (RING finger) 288 327 - -
Apr5g0827 338 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 337 IPR017066 -
Apr5g0827 338 Coils Coil 149 169 - -
Apr5g0827 338 Coils Coil 175 195 - -
Apr5g0827 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 337 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0827 Apr-Chr5 11969672 11971018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0827 280 327 Miscellaneous Gene Families AT4G39050 33.333 1.21e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0827 5 11969672 11971018 Apr5g0827 5 11969672 11971018 ECH