Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0824 ATGAAGGACAACGGTAGGAGGCATGGTGCAATGTCACCATGCGCAGCATGCAAACTTTTACGAAGGAGATGTGCACAGGATTGTGTGTTTGCTCCTTATTTCCCTGCAGATGAGCCCCAGAAGTTCGCCAGTGTCCACAAGGTTTTTGGGGCTAGCAATGTCAACAAAATGTTACAGGAATTGCCAGAGAACCAACGAAGCGATGCAGTTAGCTCAATGGTATATGAAGCAAATGCAAGGATGAGGGATCCTGTGTATGGATGTGTGGGAGCCATATCCTCTCTTCAGCAACAGGTTGATGCGTTACAAAGCCAATTGGCACTTACACAAGCAGAGGTTGTGCACATGAGAATGCGCCAAGTGTCACCTTCATCTGATCAGCACAAACTGGTGCCTGCAACCTCCAATTCATCCTCAGAGAATTTATCCCCTACAAGCAGGCTCACCAAGTCCCTTTTCGCCATGGACATGGTCGTTGATCAAGCAAGCATGGGAGAGTCCTTGTGGTCATGTTAG 516 0.4806 MKDNGRRHGAMSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPENQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQVDALQSQLALTQAEVVHMRMRQVSPSSDQHKLVPATSNSSSENLSPTSRLTKSLFAMDMVVDQASMGESLWSC* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0824 171 Coils Coil 92 112 - -
Apr5g0824 171 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Apr5g0824 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 168 - -
Apr5g0824 171 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Apr5g0824 171 MobiDBLite consensus disorder prediction 120 144 - -
Apr5g0824 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0824 Apr-Chr5 11905191 11909213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0824 1 171 AS2 family AT1G31320 68.571 1.90e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr5g0824 LOB 9.7e-44 No_clan