Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0793 ATGGCTACCACTGTCTCCTTCTTTCCATCTCCAACGCTTTTGTCTCATTATCAACTTTCGCTCTCTTCAGTCCCCAAATTCAAACCCTACACCGTTGCTTCCCGCCAACTCTTGTGCATCTCCCACAACACTATCTCTGTCTCTGCTTTCAGAAACCAAACAACCTCTCCAACGTTCCTCGCAATGTCTTCTCCCAACACCGAGCCTATGCTTCCTCCTTATAACGTTTTGATAACTGGGTCAAGCAAAGGAATAGGGTATGCATTGGCAAAAGAATTTTTAAAAGCTGGTGACAACGTCATGATTTGCTCAAGATCATATGAAAGGGTAGAGACTTCTGTCCAGAGCTTGAGAGTAGAATTTGGGGAGCAGCATGTGTGGGGCACTAAATGTGATGTGAGAAACGCAGAGGATGTGAAGAATTTAGTTTCATTTGCTCAAGAGAAACTGAAATACATTGATATATGGATCAACAATGCTGGATCAAATGCATATAGCTATAAGCCACTTGCTGAGGCTTCTGATGAAGATCTTATTGAGGTGGTTACAACAAATACACTTGGCTTGATGATATGTTGTAGAGAGGCAATAAGGATGATGGTGGTCCAGCCTCGTGGAGGTCATATTTTTAATATTGATGGAGCAGGTTCAGATGGAAGACCAACTCCCAGGTTTGCTGCATATGGAGCAACAAAGAGAAGTGTAGTGCATTTAACAAAGTCTTTACAGGCAGAATTGCAGATGCAAGATGTTAAAAATGTTGTGGTGCATAATCTTTCGCCAGGAATGGTTACAACGGATCTTCTTATGTCTGGCGGAAATACAAAGCAGGCAAAGTTTTTCATTAATGTCTTGGCTGAACCAGCCGAAGTGGTTGCAGAATATTTAGTTCCAAACATTAGATCTATCCCTGCCAATGGATCAATGAAACCAACATACATTCGATTCCTCACTGGTTTGAAAGCCTATTCCCAGATATTTTCAAGATTGGCATTTGGGGCAAGAAGGAACCGGTACATTCTTGAAGATTGA 1032 0.4186 MATTVSFFPSPTLLSHYQLSLSSVPKFKPYTVASRQLLCISHNTISVSAFRNQTTSPTFLAMSSPNTEPMLPPYNVLITGSSKGIGYALAKEFLKAGDNVMICSRSYERVETSVQSLRVEFGEQHVWGTKCDVRNAEDVKNLVSFAQEKLKYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIRMMVVQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVVVHNLSPGMVTTDLLMSGGNTKQAKFFINVLAEPAEVVAEYLVPNIRSIPANGSMKPTYIRFLTGLKAYSQIFSRLAFGARRNRYILED* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0793 343 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 162 IPR002347 -
Apr5g0793 343 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 215 IPR002347 -
Apr5g0793 343 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 228 247 IPR002347 -
Apr5g0793 343 CDD SDR_c 76 297 - -
Apr5g0793 343 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 75 294 IPR036291 -
Apr5g0793 343 Gene3D - 73 309 - -
Apr5g0793 343 Pfam short chain dehydrogenase 76 271 IPR002347 -
Apr5g0793 343 PRINTS Glucose/ribitol dehydrogenase family signature 75 92 IPR002347 -
Apr5g0793 343 PRINTS Glucose/ribitol dehydrogenase family signature 151 162 IPR002347 -
Apr5g0793 343 PRINTS Glucose/ribitol dehydrogenase family signature 201 217 IPR002347 -
Apr5g0793 343 PRINTS Glucose/ribitol dehydrogenase family signature 228 247 IPR002347 -
Apr5g0793 343 PRINTS Glucose/ribitol dehydrogenase family signature 252 269 IPR002347 -
Apr5g0793 343 PANTHER CHLOROPHYLL(IDE) B REDUCTASE NOL, CHLOROPLASTIC 25 343 - -
Apr5g0793 343 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 25 343 - -
Apr5g0793 343 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 215 243 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0793 Apr-Chr5 11401699 11415831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0793 22 281 Acyl Lipid Metabolism Gene Families AT1G24360 28.731 8.69e-17 78.2