Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0792 ATGCATAATCCAAAGTCTGCAGCGTCTTTTCTGATAGCACGTGCCAAGTCCCTCAGACTTCACCACCACTATCACCGTGTCCCTTCTTCAACCTCAACCCCACTCTTCAAACCTCAACCTTGCCTTTCTTCTTTACGTAATGCCAAATCCCTCATCGCCACACGCCTCTTCTCCGGTTACTATTCCCTCGAACAGTTCTCCGACGATGAATACGACTGTGATTTCGGTAGCCAACAGGCATCGTCGACGGTGGCCAATGTGGATGAGTGGAAATGGAAACTCAGCATGCTGTTACGCAGTGAAAAGGACCAGGAGATTGTATCTAGAGACAGGAAAGATAGGAGAGACTATGAACAGATAGCTAACCTTGCCAAAAGAATGGGACTTTTCAGTGAGTTGTTTGGAAAAGTCGTTGTTGCAAGCAAGGTGCCTCTTCCTAACTACCGGCCAGATTTGGATGACAAACGCCCACAAAGAGAGGTTGTTATTCCTCTAAGCTTGCAAAGGAGGGTTGAGGGTTTGTTGCAAGAATACCTTGATAGACTTCAGTTGAATTCTGAAAAGACAATTGACCACCTGGATGATGCGAAGTCTGCCAAACAGGTTAAAGATATAGACATGGATGAAAATGCTGATTCTTTTGTGGATGAATCTGTTATGGAAAAGGTTCTTCAGAAGAGGAGTTTGAGGATGCGTAATATGCAAAGGGCTTGGCAGGAATCACCTGAAGGCAAGAAGATGCTGGAATTCCGGAAGTCACTACCATCATTCAAGGAGAAGCAAGGTTTACTTCAAGCTATAGCACATAACCAGGTGATAGTTATATCCGGAGAGACTGGATGCGGTAAAACCACTCAACTTCCTCAGTATGTATTAGAATCAGAGATAGAGTCTGGTCGTGGAGCATTTTGTAGCATTATTTGCACACAACCTCGAAGGATATCTGCTATGGCAGTGGCTGAGAGAGTGTCAGCTGAGAGAGGAGAGCCTCTTGGTGAAACAGTTGGCTTCAAAGTTCGATTAGAAGGAATGAAGGGGAAAAACACCCATCTACTATTTTGTACCAGTGGTATATTACTTAGAAGATTGCTAAGTGATCGAAACCTGAATGGTATAACACATGTTTTTGTGGATGAAATTCATGAAAGAGGCATGAATGAAGACTTCTTACTGATTGTTTTAAAGGATCTGCTGCCACGTCGTCGGGATTTAAGATTAGTTTTAATGAGTGCCACCTTGAATGCTGAGCTTTTTTCAAATTATTTTGGAGGTGCTCCTACATTTCATATTCCAGGTTTCACCTATCCTGTTAGAGCTCACTTTTTAGAAGATGTTTTGGAAATGACTGGATATAAGTTGACTTCCTTTAACCAAATTGATGATTATGGTCAAGAGAAAATGTGGAAAACACAAAAGCAACTAGCGCCACGAAAGAGGAAAAATCAGATCACTGCTCTTGTCGAGGATGCTCTTTCTAAATCAAGTTTTGAGAACTATAGCTCCAGGGCACGTGATTCTCTTGCATCTTGGGCACCTGATTGCATAGGGTTTAATCTAATTGAGGCTGTTCTTTGCCATATATGTCGGAAGGAACGACCAGGTGCTGTCTTAGTATTTATGACTGGTTGGGAGGATATAAGCTGTTTAAGAGATCAACTTAAAGCGCATCCTCTTTTAGGAGATCCCAATAGAGTTCTGCTTCTAACATGTCATGGTTCAATGGCAACATCAGAACAGAAACTCATATTTGAGAAAGCACCTCCAAATATAAGAAAAGTAATACTTGCTACAAATATGGCAGAGGCAAGTATTACAATCAATGACATAGTGTTTGTGGTTGATTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTGAATAACACACCATGTCTTCTACCTTCTTGGATATCTCAAGCATCTGCCCGGCAGAGAAGGGGTAGAGCTGGTCGCGTGCAGCCGGGAGAATGCTACCACCTTTATCCTAAATGTGTTTATGAAGCTTTTTCTGAATATCAACTCCCTGAACTACTGAGAACGCCCTTGAACTCTCTTTGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATAGGAGAGTTCTTATCAGCAGCTTTACAGGCACCAGAGCCTCGGGCTGTTCAAAATGCTATTGATTTTCTCAAGATGATTGGAGCATTAGATGAAAAAGAAGATCTTACTAATCTTGGGATGTTTCTCTCTATGCTTCCTGTAGATCCCAAGCTGGGAAAAATGTTAATCATGGGAGCTATATTTCGATGCTTTGATCCTGTTCTTACAATAGTTGCTGGCCTTAGTGTCCGGGATCCTTTTCTTTTGCCCCAAGACAAGAGGGATTTAGCGGGCACTGCAAAGTCTAGATTTTCTGCTAAAGATTACAGTGACCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCAGAAAGAGAAGGATCAGCTTATGAGTACTGCTGGAGAAATTTTCTCTCTGCCCAAACTCTTCAGGCTATTCATTCACTTCGGAAGCAGTTTAGCTTCATCTTGAAAGAAGGTGGCTTGGTGGATGCAGATGCAAGCTTTATTAACAAATTGAGTCACAATCAGTCACTTGTGCGTGCAGTCATTTGTTCTGGACTCTTTCCTGGCATAGCATCAGTGGTGCACAGGGAGACATCCATGTCATTTAAAACAATGGACGATGGCCAGGTTTTATTATATGCTAATTCAGTGAATGCACGCTACCAGACCATTCCTTACCCGTGGTTAGTTTTTGGTGAGAAAGTTAAGGTCAATGCTGTTTTCATCCGTGACTCCACTGGTGTATCTGATTCAATACTCATCTTTTTTGGTGGTGCTCTAAGTAATGGAATGCAGGCTGGGCATCTGAAAATGTTAGATGGGTATGTTGACTTCTTCATGGATCCTAGTTTAGCTGACTGCTATTTGAAGCTTAAGGAAGAGCTTGATAAGCTTATCCAAAAGAAGCTGGAAGATCCTAGCTTTGATATTCACAAGGAGGGGAAGTACTTGATGCTTGCTGTTCAGGAGCTGGTTTCAGGGGATCAATGTGAAGGAAGATTTGTATTTGGCCGTGAAAGCCGGAAGCCTAGGGCCTCTAATGATGAGAACAAATTCACAAAAGATGGGACAAACCCCAAGAGCTTGCTGCAAACACTGTTGATGCGAGCAGGGCACTCTCCACCAAAATACAAAACAAAACATCTTAAAACAAACGAGTTTAGGGCCCTGGTGGAGTTTAAAGGAATGCAATTTGTTGGCAAACCAAAGAGAAACAAGCAACTTGCAGAGAGGGATGCTGCTATAGAGGCATTGGCTTGGTTGACTCACACTTCTGATAATTATCAGCATGAAGATGATAACTCTCCTCCTGATGTCACTGACAACATGCTAAAACTACTAGGGAAGCGTAGAAAATCAAAGCGACGCTCTGGTTGA 3459 0.4238 MHNPKSAASFLIARAKSLRLHHHYHRVPSSTSTPLFKPQPCLSSLRNAKSLIATRLFSGYYSLEQFSDDEYDCDFGSQQASSTVANVDEWKWKLSMLLRSEKDQEIVSRDRKDRRDYEQIANLAKRMGLFSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYLDRLQLNSEKTIDHLDDAKSAKQVKDIDMDENADSFVDESVMEKVLQKRSLRMRNMQRAWQESPEGKKMLEFRKSLPSFKEKQGLLQAIAHNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGAPTFHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLAPRKRKNQITALVEDALSKSSFENYSSRARDSLASWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKAPPNIRKVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRAVQNAIDFLKMIGALDEKEDLTNLGMFLSMLPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEGGLVDADASFINKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILIFFGGALSNGMQAGHLKMLDGYVDFFMDPSLADCYLKLKEELDKLIQKKLEDPSFDIHKEGKYLMLAVQELVSGDQCEGRFVFGRESRKPRASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNYQHEDDNSPPDVTDNMLKLLGKRRKSKRRSG* 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0792 1152 CDD SF2_C_RHA 508 661 - -
Apr5g0792 1152 MobiDBLite consensus disorder prediction 1120 1152 - -
Apr5g0792 1152 MobiDBLite consensus disorder prediction 1033 1049 - -
Apr5g0792 1152 SMART ultradead3 252 445 IPR014001 -
Apr5g0792 1152 CDD DEXHc_RHA-like 270 430 - -
Apr5g0792 1152 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 519 693 IPR001650 -
Apr5g0792 1152 SMART DRBM_3 1053 1116 IPR014720 -
Apr5g0792 1152 Gene3D - 1031 1120 - -
Apr5g0792 1152 Pfam DEAD/DEAH box helicase 264 415 IPR011545 GO:0003676|GO:0005524
Apr5g0792 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 814 IPR027417 -
Apr5g0792 1152 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 872 953 IPR011709 -
Apr5g0792 1152 SUPERFAMILY dsRNA-binding domain-like 1046 1128 - -
Apr5g0792 1152 SMART helicmild6 547 653 IPR001650 -
Apr5g0792 1152 Pfam Double-stranded RNA binding motif 1053 1115 IPR014720 -
Apr5g0792 1152 Gene3D - 517 672 IPR027417 -
Apr5g0792 1152 SMART ha2_5 715 806 IPR007502 GO:0004386
Apr5g0792 1152 PANTHER ATP-DEPENDENT RNA HELICASE 60 1045 - -
Apr5g0792 1152 Gene3D - 202 432 IPR027417 -
Apr5g0792 1152 MobiDBLite consensus disorder prediction 1033 1052 - -
Apr5g0792 1152 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 264 431 IPR014001 -
Apr5g0792 1152 Pfam Helicase conserved C-terminal domain 522 652 IPR001650 -
Apr5g0792 1152 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 60 1045 - -
Apr5g0792 1152 Pfam Helicase associated domain (HA2) 716 802 IPR007502 GO:0004386
Apr5g0792 1152 Gene3D - 695 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0792 Apr-Chr5 11370602 11397642 Transposed