Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0772 ATGGAAAACCACATCTACGCCTCTTACAGCCCTACCACCAACTACAGATTCTTCGACCCGGACACCACCGCCACCACTGCCACCATGTTCCTTTCCCACCACCACCACCACCACCGCACCGACCCCGCCTCCGCCACCTCTCTCCGCTTCCCCTCTTCCTCCGCCGACATCGACATTGCCCCGCCAGGTGTCACTTCCAGAATCGCCTCTTCCACCGCCACAAACTTGCTCTCTCCCTGGCCCCCTTCCGCAAACGTTGCCCCTTCTTCTCTTGACCTCAAACGCTCCTCTGAGGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCACTATGCCTATATATCCACAGAGGCCAGGAGAGAAGGATTGTGCTCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATATTGTTGCGAGTGAAGCTCCTCCTGAGAGAGCAGGGGAACCAGATTGTCCATACTTTCTGAAAACTCAAAGATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCCAAGGTTTCCTCTGAAAATGCCGATGTTTTGGGCTTACCTGAGAGGCCATCAGAGCCCCCTTGTGCGTTCTACATGAAAACTGGAAAATGTAAATTTGGTGCTGCATGTAAATTCCATCACCCCAAAGATATCCAGATTCAGTTATCTGATGACATGAGTCATACTGTTGAACAGACACAAACAAATTCTATGATGGGAGGGGCAATGGGAGATACAAAACCAAATAAGTCTCTTATATCTCCACTGTTGCATAATAGCAAAGGGCTTCCTGTAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGCATCTTGCCGCTACAATCATCCTGACAGGAATGCAATTAATCCGCCCATTGCTGCATTTGGCGCTTCTGTTTTGCCGTCATCAGCTGCTAATCTGAATATTGGAGTTCTCAATCCCGCCGTGTCTGTTTATCAAGCTTTTGACCCAAGGCTGTCAAATCCAATGTCTCAGGTGGGAATTGCAGAAACTATCTATCCTCAGCGACCTGGACAGATTGAATGTGATTATTATATGAAAACTGGCGAGTGTAAATTTGGTGAAAGATGCAAGTACCATCACCCAATTGACCGCTCAGCACCATCACTGTCAAAGCAGGCTACTGTTAAACTCACTCCTGCAGGTTTACCAAGAAGAGAGGGTGCTGTCATCTGTCCTTATTATTTGAAAACTGGAACATGCAAGTTTGGGGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTGATGGAGATAGCAAAATCACAAGGAACATCTAATGGAGGGGAAGCAAAAGACCATGAAGAGGAGACTCCTTCAGAAGAGAATTGA 1467 0.4724 MENHIYASYSPTTNYRFFDPDTTATTATMFLSHHHHHHRTDPASATSLRFPSSSADIDIAPPGVTSRIASSTATNLLSPWPPSANVAPSSLDLKRSSEAWYSTNSLAKRPRYESASTMPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPNIVASEAPPERAGEPDCPYFLKTQRCKFGSKCKFNHPKVSSENADVLGLPERPSEPPCAFYMKTGKCKFGAACKFHHPKDIQIQLSDDMSHTVEQTQTNSMMGGAMGDTKPNKSLISPLLHNSKGLPVRLGEVDCPFYMKTGSCKYGASCRYNHPDRNAINPPIAAFGASVLPSSAANLNIGVLNPAVSVYQAFDPRLSNPMSQVGIAETIYPQRPGQIECDYYMKTGECKFGERCKYHHPIDRSAPSLSKQATVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMEIAKSQGTSNGGEAKDHEEETPSEEN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0772 488 ProSiteProfiles Zinc finger C3H1-type profile. 217 245 IPR000571 GO:0046872
Apr5g0772 488 ProSiteProfiles Zinc finger C3H1-type profile. 124 152 IPR000571 GO:0046872
Apr5g0772 488 Gene3D - 378 473 - -
Apr5g0772 488 Gene3D - 215 330 - -
Apr5g0772 488 Gene3D - 123 213 - -
Apr5g0772 488 ProSiteProfiles Zinc finger C3H1-type profile. 294 322 IPR000571 GO:0046872
Apr5g0772 488 MobiDBLite consensus disorder prediction 459 488 - -
Apr5g0772 488 PANTHER CCCH ZINC FINGER/TIS11-RELATED 95 471 IPR045877 GO:0003729
Apr5g0772 488 SUPERFAMILY CCCH zinc finger 125 151 IPR036855 GO:0046872
Apr5g0772 488 ProSiteProfiles Zinc finger C3H1-type profile. 380 408 IPR000571 GO:0046872
Apr5g0772 488 ProSiteProfiles Zinc finger C3H1-type profile. 176 204 IPR000571 GO:0046872
Apr5g0772 488 SMART c3hfinal6 124 151 IPR000571 GO:0046872
Apr5g0772 488 SMART c3hfinal6 380 407 IPR000571 GO:0046872
Apr5g0772 488 SMART c3hfinal6 294 321 IPR000571 GO:0046872
Apr5g0772 488 SMART c3hfinal6 430 457 IPR000571 GO:0046872
Apr5g0772 488 SMART c3hfinal6 217 244 IPR000571 GO:0046872
Apr5g0772 488 SMART c3hfinal6 176 203 IPR000571 GO:0046872
Apr5g0772 488 SUPERFAMILY CCCH zinc finger 181 202 IPR036855 GO:0046872
Apr5g0772 488 SUPERFAMILY CCCH zinc finger 434 457 IPR036855 GO:0046872
Apr5g0772 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 203 IPR000571 GO:0046872
Apr5g0772 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 383 406 IPR000571 GO:0046872
Apr5g0772 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 126 150 IPR000571 GO:0046872
Apr5g0772 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 244 IPR000571 GO:0046872
Apr5g0772 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 434 457 IPR000571 GO:0046872
Apr5g0772 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 320 IPR000571 GO:0046872
Apr5g0772 488 ProSiteProfiles Zinc finger C3H1-type profile. 430 458 IPR000571 GO:0046872
Apr5g0772 488 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 95 471 - -
Apr5g0772 488 SUPERFAMILY CCCH zinc finger 298 321 IPR036855 GO:0046872
Apr5g0772 488 SUPERFAMILY CCCH zinc finger 221 245 IPR036855 GO:0046872
Apr5g0772 488 SUPERFAMILY CCCH zinc finger 382 408 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0772 Apr-Chr5 10962406 10972416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0772 292 458 C2H2 Transcription Factor Family AT3G02830 36.905 3.82e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr5g0772 zf-CCCH 1.5e-10 CL0537