Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0729 ATGACGCAGCCATCGGCGCCACCGCCTCCAGCGTCGCTGGCGCCACCGCCGCAGCCGGCCGAGAGCCTTCGTGTCCGTTGCGCCGGCTGCCGCATGATCCTGACCGTGGCACCTGGCCTGACCGAGTTCGCGTGCCCTACCTGCCGAATGCCGCAGATGCTTCCGCCCGAGCTCATGGCTAGGGCCCAAACAGCGGCTCAGCCTGTACCTCCGTCACCCGCTCCGACTTCGCAACCGCACGTGCCTGCTCACGGCATTGATCCCACTAAGATCCAGCTTCCCTGCGCTTCTTGCAAGGCCATTCTCAACGTCCCTCACGGCCTCGCACGCTTCGCTTGCCCTCAATGCGGCGTTGACCTCGCCGTCGATGTCTCTAAGGTCAAGCAGTTCTTCCCCTCCATGCCGCCACCGGAAGAAGTTAACGAGGTTGCTGTTGAAGTTGAGCGGGATGAAGATGAAGGTGGCATGATTGGAGAAACATTTACAGATTATCGACCGCCAAAAGTATCTATTGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCACCTGAGCCCACTTATGATCCAATAACTAAAGATAATTTGGAAAGTTCAAACGCTTTGTCATGCTTGCAAATAGAGACATTGGTCTATGCTTGTCAGAGACACCTTCAACACATCTCAAATGGAGCTAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACAATTGCAGGGCTAATTTGGGAGAACTGGCATCATGGTAGGAGGAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGACGTGGGTGCAACATGCATTGAAGTGCATGCTTTGAACAAACTGCCATATTCTAAGCTTGATTCAAAGTCTGTTGGGGTCAGGGAGGGAGTTGTTTTCTTGACATACAATAGTCTCATAGCAAGTTCTGAGAAAGGCCGTTCTCGCCTCCTGCAGCTTGTGCAATGGTGTGGACCAGGGTTTGATGGTCTTATAATTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAATCTGGCAGTCAGCCAACACGAACTGGAGAAGCAGTACTTGATATCCAGGATCGACTACCTGAAGCTCGTGTTGTTTACTGCTCGGCGACTGGAGCATCTGAACCTCGCAATATGGGTTATATGGTTCGACTTGGTCTCTGGGGAGATGGGACTTCATTCTCTGACTTCCGGGAATTTCTTGGTGCTCTTGACAGAGGGGGGGTTGGAGCTCTTGAATTAGTTGCCATGGACATGAAAGCAAGGGGCATGTATTTATGTCGAACACTTAGTTATGAGGGTGCTGAATTTGAAGTTATTGAAGCACCATTAGAAGATAAAATGATGGAAATTTATAGAAAGGCAGCAGAATTTTGGGCTGAATTACGAGTGGAGTTGCTGTCAGCCTGTGCCTTCCTAAATGATAAACCTAATTGTAGTCAACTATGGCGATTATATTGGGCAAGCCACCAGCGTTTCTTTAGACACCTGTGTATGTCTGCTAAAGTCCCTGCTACTGTGAGACTGGCAAAGCAAGCATTAGTTGAAGAAAAGTGTGTAGTCATTGGACTTCAGAGTACCGGAGAAGCTAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTACTTAAATTTGTGGAAGAAAATTACCCATTACCAGAAAAACCTGAACTTCTCCCAGGAGAGGATGGGGTAAAGGAACTCCAAAGGAAGAGGCACTCTGCAACTCCTGGTGTTTCAGTAAAAGGAAGGGTCAGAAAAGTAGCCAAGTGGCATGCTCCTAGTGATGCTGAAAGTGATGAAGAGTCTGAAACTGACTCTGCTATTGAATCTACTGACTCTGATGACGAGTTTCAGATCTGTGAAATTTGCACTACAGAGGAGGAAAGGAAAAAACTGCTACAGTGTTCCTGCTGCGGTAAATTAGTCCATTCCACATGCTTGATGCCACCAATTGGTGATATAATTCCTGAAGAGTGGTCCTGCCATTTGTGTAAGGAAAAAACAGATGAATATCTTCAAGCACGACAGGCATACATAGCTGAACTTCAGAAGAGGTATGACGCTGCCTTGGAACGCAAGACAAAAATATTAGAGATCGTTCGTTCTTTGGATCTTCCAAACAATCCTTTGGATGATATTATTGACCAGTTAGGAGGTCCTGACAATGTTGCAGAAATGACAGGAAGGAGAGGAATGCTTGTGAGGGCCGCAACTGGAAAGGGTGTAACTTATCAGGCTCGTAATACGAAGGATGTGACTATGGAAATGGTTAACATGCATGAAAAACAGCTCTTTATGGATGGTAAAAAGTTAGTTGCTATTATCTCTGAAGCTGGATCAGCTGGTGTTTCTTTGCAGGCGGATAGAAGAGCTTCAAATCAGAAAAGAAGGGTTCATTTAACCCTAGAACTTCCATGGAGTGCTGACCGAGCAATTCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCATCAGCACCGGAATACAGGATACTCTTTACAAATCTTGGTGGAGAACGCCGGTTTGCATCAATTGTTGCTAAGAGATTAGAATCTCTTGGTGCTTTGACACAGGGTGATCGCAGGGCTGGACCTTCATTAAGTGCTTATAATTATGATAGTGCTTATGGAAAGAGGGCTCTGATGATTATGTACAAGGGAATAATGGAGCAGGAGTCTCTGCCTGTTGTACCTCCAGGATGTTCATCTGACAAACCAGATACAATTCAAGATTTTATTGTGCAGGCAAAAGCTGCTCTTGTATCTGTTGGAATAGTAAGGGACACAGTTCTTGGTAATGGTAAAGATCTGGGAAGGTTATCTGGTCGAATTATTGATTCAGATATGCATGAAGTTGGACGATTCCTCAATCGGCTTTTGGGACTACCGCCTGATATTCAGAATGGGTTATTTGAGTTATTTGTGAGTATCTTGGATCTTCTAGTTCGGAATGCTCGCATTGAAGGTAACCTTGACACAGGAATTGTTGACTTGAAAGCTAATGTGATTGAATTACAAGGGACTCCAAAGACTGTTCATGTTGATCAATTGACCGGGGCTTCAACGGTTCTGTTTACATTTGTCTTGGATCGTGGGATCACATGGGAGTTGGCAAGTATGATACTGAATGAAAAGCAAAAGGATGGGCTGGGTTCATCCAATGATGGCTTCTATGAGTCTAAGAGGGAGTGGTTGGGAAGACGTCATTTCATTTTAGCATTTGAAAGTTCTGCTTCAGGTATGTATAAGATAGTTCGTCCCCCTGTTGGAGAATCAAACCGGGAGATGCCTCTGTCTGAATTAAGAAGTAAATATAGAAAAATTTCATCTCTAGAGAAGGCTCAATCAGGGTGGGAAGAGGAGTATGAAGTTTCATCTAAACAGTGTATGCATGGTCCCAATTGTAAGATTGGTGAATTTTGTACAGTTGGTAGAAGACTACAGGAAGTAAATGTCTTGGGTGGTCTCATTCTTCCTGTTTGGGGAGCAGTAGAAAAGGCCCTTTCTAAGCAGGCCCGTCTAAGCCATAGGAGGCTGCGTGTTGTACGCATTGAAACTTCTGTGGATAACCAACGAATTGTTGGGCTTCTTGTTCCTAATGCAGCAGTGGAAAATGTGCTTCAAGGTTTAGCATGGGTTCAAGAAATTGATGATTGA 3759 0.4546 MTQPSAPPPPASLAPPPQPAESLRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMARAQTAAQPVPPSPAPTSQPHVPAHGIDPTKIQLPCASCKAILNVPHGLARFACPQCGVDLAVDVSKVKQFFPSMPPPEEVNEVAVEVERDEDEGGMIGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPEPTYDPITKDNLESSNALSCLQIETLVYACQRHLQHISNGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSKSVGVREGVVFLTYNSLIASSEKGRSRLLQLVQWCGPGFDGLIIFDECHKAKNLVPESGSQPTRTGEAVLDIQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGDGTSFSDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMEIYRKAAEFWAELRVELLSACAFLNDKPNCSQLWRLYWASHQRFFRHLCMSAKVPATVRLAKQALVEEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWHAPSDAESDEESETDSAIESTDSDDEFQICEICTTEEERKKLLQCSCCGKLVHSTCLMPPIGDIIPEEWSCHLCKEKTDEYLQARQAYIAELQKRYDAALERKTKILEIVRSLDLPNNPLDDIIDQLGGPDNVAEMTGRRGMLVRAATGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRASNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMIMYKGIMEQESLPVVPPGCSSDKPDTIQDFIVQAKAALVSVGIVRDTVLGNGKDLGRLSGRIIDSDMHEVGRFLNRLLGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDLKANVIELQGTPKTVHVDQLTGASTVLFTFVLDRGITWELASMILNEKQKDGLGSSNDGFYESKREWLGRRHFILAFESSASGMYKIVRPPVGESNREMPLSELRSKYRKISSLEKAQSGWEEEYEVSSKQCMHGPNCKIGEFCTVGRRLQEVNVLGGLILPVWGAVEKALSKQARLSHRRLRVVRIETSVDNQRIVGLLVPNAAVENVLQGLAWVQEIDD* 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0729 1252 Pfam C-terminal domain on Strawberry notch homologue 742 1031 IPR026937 -
Apr5g0729 1252 MobiDBLite consensus disorder prediction 632 646 - -
Apr5g0729 1252 SMART PHD_3 653 699 IPR001965 -
Apr5g0729 1252 MobiDBLite consensus disorder prediction 623 646 - -
Apr5g0729 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 797 902 IPR027417 -
Apr5g0729 1252 SUPERFAMILY FYVE/PHD zinc finger 645 704 IPR011011 -
Apr5g0729 1252 ProSiteProfiles Zinc finger PHD-type profile. 651 701 IPR019787 -
Apr5g0729 1252 PANTHER STRAWBERRY NOTCH-RELATED 20 1252 IPR026741 GO:0006355
Apr5g0729 1252 Gene3D - 199 404 IPR027417 -
Apr5g0729 1252 MobiDBLite consensus disorder prediction 1 21 - -
Apr5g0729 1252 Pfam P-loop containing NTP hydrolase pore-1 174 474 IPR039187 -
Apr5g0729 1252 MobiDBLite consensus disorder prediction 1 17 - -
Apr5g0729 1252 PANTHER OS08G0223700 PROTEIN 20 1252 - -
Apr5g0729 1252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 705 IPR013083 -
Apr5g0729 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 417 IPR027417 -
Apr5g0729 1252 ProSitePatterns Zinc finger PHD-type signature. 654 698 IPR019786 -