Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0588 ATGTCTCCACAAACCCCAATTATCCCACTTTTCATCGTCCTAGCTTCATTAGTCTTATGTACTGGTTGGTACATAGAGGAACCACATAATTACCAAACCAATGTTGAACACTACTACCCTCTGCATGATGGTAGATTGATCAAGACAAAACATAGACATTTTGGTTATATGACAAGGCCTAATAAAGCTACCCATCTTTCTTCAAGGAGTCGTGGAACAGTTAGTGTTGATGATTTTGGAGCCAAAGCTGATGGAAGAGATGATTCCGAGGCATTTGAGAAGGCATGGAATGAAGCTTGCTCTAAAGGTGCTGTCCTTGTGGTACCTGAAAATAGGATCTATACTCTTAAGCCAATAACATTTTCAGGTCCATGCCAACCCAACACTGCCTTTATGATCTATGGAACAATCGAGGCATGGACTCAAATGGAGGCATATGGAGATAGACAGAGCTGGATTGTGTTTGATAGTGTCTCAAATTTCAGGGTTGATGGTGGTGGTACTTTCAATGGCAATGGCAAAAAATGGTGGCAAAACTCTTGCAAAGCCAACAAGAACCTTCCATGCAAAGATGGACCAAGACCAAAAGCCGTGACTTTCTATCAATGCAACAATTTGAAAGTGACTAACCTGAGATTCAAGGATGCACAACAAATGCATGTGACCTTCATGAAATGTTTCAATGTTATTGTTTCGAATCTCGTTATCAGAGCACCAGGGAACAGCCCCAACACTGATGGAATTCATGTCGCGGAGACACAAAATATTGCCATAAGCAACAGTGACATTGGCACAGGTGATGATTGTATTTCAATAATAAGTGGGTCCCAAAATGTTCGAGCCACTGATATCACATGCGGACCTGGACATGGAATAAGCATTGGAAGCTTAGGAGCTGATAAATCAGAAGCTGAAGTGTCCAATGTGATAGTGAACAGGGCCACCTTAACAGGAACAACCAATGGAGTGAGAATAAAGACTTGGCAGGGAGGTTCTGGGTATGCAAGAAACATCAAATTTTTGAACATAATGATGCAAAATGTGACAAATCCAATAATCATAGATCAGTACTATTGTGATCAAGCAGCGCCATGCCACGAGCAGGACTCAGCGGTGCAATTAAGCAATGTGTTATACCAAAACATAAGAGGAACAAGTGCCTCCGAAGTGGCTATAAAATTTGACTGCAGCCAAGCTGTCCCATGCAGAGAAATCTACGTGCAAGATGTGATTTTAGAACCAGAAGGCAACAACGGTGGCACCATTGCTACATGTGAGAATGTTAGATATGTGAATAGAGGAAAGTTTTTTCCTCAATGCTCTCCTAAGTCTCCTTGA 1338 0.417 MSPQTPIIPLFIVLASLVLCTGWYIEEPHNYQTNVEHYYPLHDGRLIKTKHRHFGYMTRPNKATHLSSRSRGTVSVDDFGAKADGRDDSEAFEKAWNEACSKGAVLVVPENRIYTLKPITFSGPCQPNTAFMIYGTIEAWTQMEAYGDRQSWIVFDSVSNFRVDGGGTFNGNGKKWWQNSCKANKNLPCKDGPRPKAVTFYQCNNLKVTNLRFKDAQQMHVTFMKCFNVIVSNLVIRAPGNSPNTDGIHVAETQNIAISNSDIGTGDDCISIISGSQNVRATDITCGPGHGISIGSLGADKSEAEVSNVIVNRATLTGTTNGVRIKTWQGGSGYARNIKFLNIMMQNVTNPIIIDQYYCDQAAPCHEQDSAVQLSNVLYQNIRGTSASEVAIKFDCSQAVPCREIYVQDVILEPEGNNGGTIATCENVRYVNRGKFFPQCSPKSP* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0588 445 PANTHER - 6 441 - -
Apr5g0588 445 PANTHER POLYGALACTURONASE 6 441 - -
Apr5g0588 445 ProSitePatterns Polygalacturonase active site. 283 296 IPR000743 GO:0004650|GO:0005975
Apr5g0588 445 SUPERFAMILY Pectin lyase-like 68 441 IPR011050 -
Apr5g0588 445 Gene3D - 59 440 IPR012334 -
Apr5g0588 445 Pfam Glycosyl hydrolases family 28 106 429 IPR000743 GO:0004650|GO:0005975
Apr5g0588 445 SMART pbh1 306 327 IPR006626 -
Apr5g0588 445 SMART pbh1 253 274 IPR006626 -
Apr5g0588 445 SMART pbh1 226 252 IPR006626 -
Apr5g0588 445 SMART pbh1 335 356 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0588 Apr-Chr5 7987404 7990281 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0588 5 7987404 7990281 Apr2g0804 2 11401909 11405087 PCT