Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0149 ATGGGAGAAACACACCGCCATTCAATTGCATCCACATCGTCCAAACTGGGGATGAGAGGCGGCGGTGAAATTGTGGAGGTCCAAGGAGGCCACATTGTCCGCTCCACCGGCCGTAAGGACCGCCACAGCAAGGTTTGCACCGCCAAAGGTCCAAGGGACCGCCGTGTGCGCCTCTCCGCACACACCGCCATTCAATTCTACGACGTGCAAGACCGCCTTGGCTACGACCGCCCCAGCAAGGCCGTCGACTGGCTCATTAAAAAGGCCAAAGCCGCCATCGATGAATTGGCGGAGCTGCCAGCATGGAACCCCGCCATCACATGCTCTTCTGCATTGCAACATCAACAAATAAATGAAATCGTTCACCAGAAATCCCCGAACGATTCAATGATAGCTCCTACTGGAACTATCGTTGCCGAAAGAATTGTGCATCAATTTCCTCCGCCACAATTGGGTGAAAATGATGGCAATAACAACAACAGTAACAAATACAACAGTGCTTCTGGTTTTCTGCCAGCGTCTTTGGACAGTGACAACATTGCCGAGACAATTAAGTCTTTCTTTCCTATGGAGGCCACCACCACCTCGTTTCAGAATTACCCGCCGCCGCCGGATTTGCTGTCGCGAACAGCCAGCGGTGGCGGCGCCACCCAGCAGGATCTGCGGCTCTCTTTGCAGTCCTTTCAGGACCCTGTTCTGCTTCACCAGCAGGCTCAGACCCACCACGAGCCCGTGCTATTCTCCGGAACCGCCGCGGCGCTCGGCTTCGACGGCGGTTCCGGGTGGTCAGAGCAGCAGCATCAACATCACTCGGATGAACACCGCTTGCACAGATCAATGAATTGGAATACTAATGCTGCAGATGCTGCTAACAGTGGCCATGGCGGTGGGTTTGTGTTCAACTCGCCGGCGCCGGCGTTTGGCCATGGCCAGTTTCTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACTCCTTCGGTTCGTGCTTGGATAGACCCTTCAATGGCGACGGCCGCGGCCGTCGCTGATCACCACCACCACCATCACCACCAAAACTATCTCTCGTCGTTGATCCACCAGGCTTCCGTCTCCGGCGGTCTCGGATTCTCCGGCACCGGTGGCTTCTCCGGCTTCCATATCCCAGCACGAATTCAGGGTGAAGAGGAACACGGCGGCGTATCTGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1221 0.5586 MGETHRHSIASTSSKLGMRGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWNPAITCSSALQHQQINEIVHQKSPNDSMIAPTGTIVAERIVHQFPPPQLGENDGNNNNSNKYNSASGFLPASLDSDNIAETIKSFFPMEATTTSFQNYPPPPDLLSRTASGGGATQQDLRLSLQSFQDPVLLHQQAQTHHEPVLFSGTAAALGFDGGSGWSEQQHQHHSDEHRLHRSMNWNTNAADAANSGHGGGFVFNSPAPAFGHGQFLSQRGPLQSSNTPSVRAWIDPSMATAAAVADHHHHHHHQNYLSSLIHQASVSGGLGFSGTGGFSGFHIPARIQGEEEHGGVSDKPSSASSDSRH* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0149 406 Pfam TCP family transcription factor 37 144 IPR017887 -
Apr5g0149 406 MobiDBLite consensus disorder prediction 1 15 - -
Apr5g0149 406 PANTHER TRANSCRIPTION FACTOR TCP4 1 406 - -
Apr5g0149 406 MobiDBLite consensus disorder prediction 33 53 - -
Apr5g0149 406 MobiDBLite consensus disorder prediction 1 53 - -
Apr5g0149 406 MobiDBLite consensus disorder prediction 385 406 - -
Apr5g0149 406 ProSiteProfiles TCP domain profile. 38 96 IPR017887 -
Apr5g0149 406 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 406 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0149 Apr-Chr5 1296261 1299293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0149 20 406 TCP Transcription Factor Family AT1G53230 50.761 2.20e-108 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr5g0149 TCP 3.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0440 2 5106308 5109916 Apr5g0149 5 1296261 1299293 ECH
Apr2g1876 2 24315581 24318917 Apr5g0149 5 1296261 1299293 ECH
Apr3g0993 3 24783493 24787425 Apr5g0149 5 1296261 1299293 ECH
Apr5g0149 5 1296261 1299293 Apr3g0993 3 24783493 24787425 ECH
Apr5g0149 5 1296261 1299293 Apr5g0149 5 1296261 1299293 ECH
Apr5g0149 5 1296261 1299293 Apr2g1876 2 24315581 24318917 PCT