Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0106 ATGGACGACAACAACATGAGAAGGGTGTCAAGAATTCTTATGTCTCCATCACCACCGACCCCACCTCTAGTTTCCTTCATTGCAACTCTTGCAATTGCAACGTTAATCTTCCTGTGCCTCTATGTTTTTTCAGCCATTGTTTCTGTGGCCATACTTCTAGCCCTTTACATCACATCAGTGTTCCTTTGCAAGTTTACTCGTGACAATCGTGAACTGAATGCTGAATTGAGAGAAAGAACCTCTTTTTATGCCCAAATCCCTCCAAATAACCAAAGGGTAGTGAGAATTTTCAATAAGCTTTTCTGGGTTGTTGAGGAAAAGAGGGGAAAGCAAAGGAAACTACTAATAGGATCTGTTGTGTGTTTTGGAAGCCAAGAAATGGCATCATCAAGTAGTAGTGAATGTGCAATTTGCTTTGAGGATTTCAAGGAGGGAGAAGAATGCCTTGTTTTCTCAGTTTGTGGCCACATTTTCCATTGTGATTGTATCCACCGTTGGGTAGAGAAGAAGCCCAATTGCCCAATTTGTCGTCATTGTGTCCCATCAGCTGCCACCATGATCACTAAATCTAGAAGCATAGAACTGCTGGCAAATTTAGTTTAG 603 0.4163 MDDNNMRRVSRILMSPSPPTPPLVSFIATLAIATLIFLCLYVFSAIVSVAILLALYITSVFLCKFTRDNRELNAELRERTSFYAQIPPNNQRVVRIFNKLFWVVEEKRGKQRKLLIGSVVCFGSQEMASSSSSECAICFEDFKEGEECLVFSVCGHIFHCDCIHRWVEKKPNCPICRHCVPSAATMITKSRSIELLANLV* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0106 200 SUPERFAMILY RING/U-box 134 182 - -
Apr5g0106 200 Pfam Ring finger domain 134 177 IPR001841 -
Apr5g0106 200 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 186 - -
Apr5g0106 200 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Apr5g0106 200 SMART ring_2 135 176 IPR001841 -
Apr5g0106 200 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 15 186 - -
Apr5g0106 200 SUPERFAMILY ABC transporter transmembrane region 17 104 IPR036640 GO:0005524|GO:0016021
Apr5g0106 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 183 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0106 Apr-Chr5 946340 946942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0106 24 183 C3H Transcription Factor Family AT1G53010 30.556 4.40e-16 71.2