Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2560 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACGTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTGTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAATCGTGGCAAGCTTTATGAGTTCTGTAGCACCTCTAGCATGCTCAAAACTCTTGAAAGGTACCAGAAGTGCAGTTATGGTGCTGTTGAAGTTAGCAAACCTGCCAAAGAGCTTGAGAGTAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAAAGAAACCTTCTAGGGGAAGACTTAGGCCCACTGAATACCAAAGAACTTGAGCAGCTTGAACGGCAGTTGGATTCATCTCTGAAGCAAGTTAGGTCCACAAAGACACAATTCATGCTGGACCAATTAGCTGATCTTCAAAATAAGGAGCAGATGTTGGTTGAAGCAAATAGATCCTTGACAATGAAGCTGGAAGAAATCAATTCAAGAAATCATTATAGGCAATCATGGGAAGCTGGTGATCAAAGTATGGCATATGGTGGTCCACAGAATGCTCACTCTCAGGGCTTCTTCCAGCCATTGGAATGCAATCCCACATTGCAAATTGGTCCTGATTACAGGTACAATGCTGTAGCTTCAGATCAGATAACTGTGACAACTCAAGCTCAACAAGTGAATGGATTTATTCCTGGATGGATGCTTTGA 747 0.4351 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSSMLKTLERYQKCSYGAVEVSKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEEINSRNHYRQSWEAGDQSMAYGGPQNAHSQGFFQPLECNPTLQIGPDYRYNAVASDQITVTTQAQQVNGFIPGWML* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2560 248 PANTHER MADS BOX PROTEIN 1 233 - -
Apr4g2560 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr4g2560 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Apr4g2560 248 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr4g2560 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Apr4g2560 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr4g2560 248 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 233 - -
Apr4g2560 248 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr4g2560 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr4g2560 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr4g2560 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr4g2560 248 Coils Coil 124 144 - -
Apr4g2560 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr4g2560 248 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Apr4g2560 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2560 Apr-Chr4 34416667 34421682 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr4g2560 K-box 7.1e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2560 4 34416667 34421682 Apr9g2936 9 36213519 36219329 ECH
Apr4g2560 4 34416667 34421682 Apr4g2560 4 34416667 34421682 ECH
Apr4g2560 4 34416667 34421682 Apr6g0285 6 2923105 2928826 ECH
Apr7g1379 7 20877962 20889457 Apr4g2560 4 34416667 34421682 ECH
Apr6g0285 6 2923105 2928826 Apr4g2560 4 34416667 34421682 PCT