Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2460 ATGTCGGAAGCAAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCTGTGCCGGAGATCCCGGCCGGATCCGGAGACTCCGCCGGAGCTCCGGCTTCTTCTTCAGGGGATGTTGTTGATGACACTGTTGATCACAACCATGCTTCTTCCACCAACTCTTCCAGGGAGTCATACACCAATAGAGATGCACAAGAGCATGATGCTATTCACAAGGACTCATCGGAAGAAAAACCAACTGATGATAAGAAGGAAGATGGAGCCCCCGCCCAATCATCAGAAGAGTTCACCAATCCAGATACTGCCTCTAGAACCGGCGAAGAATCCATTACCCTATCCACTGAGAGGGAGGCTACAACGTTGAAAACTTCAAAAAGCGAAGAAGAACAGGGTGAGCAGGGTGAGACAAGTAATTCACAGGATAAGAACCTTAAAAAACCAGACAAAATATTGCCTTGTCCTCGCTGTAATAGCATGGACACTAAGTTCTGCTACTACAATAATTACAATGTGAACCAACCGCGCCACTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGTGGGACAATGAGGAATGTTCCTGTAGGAGCTGGTCGCAGGAAAAACAAGAATTCAACTTCTCACTATCGCCAGATAACTGTTCCTGAAGCAGCACTCCAGAATTCTCGGACCGAGTTGCCAAATGGATCGCATCATCCCTCCTTGAAGTGCAATGGTACAGTCCTCACATTTGGATCCGATGCACCCTTGTGTGAATCAATGGCATCTGTTTTGAACCTTGCTGATAAAAAAGTGCACAATTACACAAGAAATGGATTTCATAAACCTGAAGGACTGAAAATTCCTGTTCCATGTGCAAGTAAAGAAAAAGGGGATGGTCAATCTAATAAATCTTCTGTTACCTCCGCAAAATCAATGGAAGGTGCAAGCACCAATGGATCCCCAGAACAAGCTATGCAGGATTGTCAAAGCTTCCTACCCCAGGTTCCCTACTTTCCCGGGACCCCTTGGCCTTTTCCGTGGAATCCAGTGCAGTGGAGCTCTCCAGTGCCACCGCCTGCATTTTGCCCACCGGGATTTGCCGTGCCACTCTATCCTGCAACAGCTTATTGGGGTTGTGCTGTGTCAGGTGCATGGAACATCCCATGGCTAGCCCAATCATCATCACCAAATGGTGCAACCCCTAACTCTGGCCCTAACTCTCCAACCTTGGGTAAACATTCCAGGGAAGACAACATGCTCAAACCAAACGGCTCAGGTGGTGAGGATGAGCATAGCAAAGAAAATAACAAAGAAAAGTGCCTTTGGGTTCCAAAAACTCTGAGGATTGATGACTCAGGAGAAGCAGCAAAAAGCTCTATATGGACAACACTTGGGATTAAAAATGATAAGGCTGAATCAGTTCCTGGGGGAGGGATCTTTAAAGCGTTCCCTTCTAAACATGAAGAAAAGAACCACTCAATACAAGCCTCACATGTCTTGCAGGCCAATCCAGCCGCGTTGTCGAGGTCACTTAACTTTCATGAGACCTCATAA 1539 0.4717 MSEAKDPAIKLFGKTIPVPEIPAGSGDSAGAPASSSGDVVDDTVDHNHASSTNSSRESYTNRDAQEHDAIHKDSSEEKPTDDKKEDGAPAQSSEEFTNPDTASRTGEESITLSTEREATTLKTSKSEEEQGEQGETSNSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRQITVPEAALQNSRTELPNGSHHPSLKCNGTVLTFGSDAPLCESMASVLNLADKKVHNYTRNGFHKPEGLKIPVPCASKEKGDGQSNKSSVTSAKSMEGASTNGSPEQAMQDCQSFLPQVPYFPGTPWPFPWNPVQWSSPVPPPAFCPPGFAVPLYPATAYWGCAVSGAWNIPWLAQSSSPNGATPNSGPNSPTLGKHSREDNMLKPNGSGGEDEHSKENNKEKCLWVPKTLRIDDSGEAAKSSIWTTLGIKNDKAESVPGGGIFKAFPSKHEEKNHSIQASHVLQANPAALSRSLNFHETS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2460 512 MobiDBLite consensus disorder prediction 390 433 - -
Apr4g2460 512 Pfam Dof domain, zinc finger 148 205 IPR003851 GO:0003677|GO:0006355
Apr4g2460 512 ProSitePatterns Zinc finger Dof-type signature. 153 189 IPR003851 GO:0003677|GO:0006355
Apr4g2460 512 MobiDBLite consensus disorder prediction 91 119 - -
Apr4g2460 512 MobiDBLite consensus disorder prediction 1 151 - -
Apr4g2460 512 PANTHER CYCLIC DOF FACTOR 2 1 511 IPR045174 GO:0003700|GO:0006355
Apr4g2460 512 MobiDBLite consensus disorder prediction 409 433 - -
Apr4g2460 512 MobiDBLite consensus disorder prediction 284 320 - -
Apr4g2460 512 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 511 - -
Apr4g2460 512 ProSiteProfiles Zinc finger Dof-type profile. 151 205 IPR003851 GO:0003677|GO:0006355
Apr4g2460 512 MobiDBLite consensus disorder prediction 390 408 - -
Apr4g2460 512 MobiDBLite consensus disorder prediction 292 320 - -
Apr4g2460 512 MobiDBLite consensus disorder prediction 60 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2460 Apr-Chr4 33570455 33573594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2460 6 512 C2C2-Dof Transcription Factor Family AT5G39660 46.429 1.14e-118 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr4g2460 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2460 - - aprc:113862693 1033.48